RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MAP6D1Q9H9H5 199 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 TMEM14CQ9P0S9 112 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 K7EIL1 84 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 CMC4P56277 68 aaPredicted RBP11.16□□□□□ -0.62
NUP54-213ENST00000513352 ODF3L2Q3SX64 289 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 DEFB121Q5J5C9 76 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 SAMD13Q5VXD3 122 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 LCN15Q6UWW0 184 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 FAM213BQ8TBF2 198 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 MRAPQ8TCY5 172 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 RAB24Q969Q5 203 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 C17orf77Q96MU5 243 aa11.16□□□□□ -0.62
NUP54-213ENST00000513352 UMAD1C9J7I0 102 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 H3BQ15 152 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 ISLRO14498 428 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 ARL14EPLP0DKL9 152 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 IGLC2P0DOY2 106 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 HIST1H1EP10412 219 aaKnown RBP11.15□□□□□ -0.62
NUP54-213ENST00000513352 PSMB3P49720 205 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 GUK1Q16774 197 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 IGFL4Q6B9Z1 124 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 APRG1Q8IVJ8 170 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 Q8N1Y9 231 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 RNF141Q8WVD5 230 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 HRH4Q9H3N8 390 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 SRD5A3Q9H8P0 318 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 ZNF586Q9NXT0 402 aa11.15□□□□□ -0.62
NUP54-213ENST00000513352 CTXND1A0A1B0GTU2 59 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 SLC17A3O00476 420 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 SOCS3O14543 225 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 ZNF124Q15973 351 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 PQLC2Q6ZP29 291 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 SSX7Q7RTT5 188 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 RNF182Q8N6D2 247 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 ZNF738Q8NE65 137 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 SLC50A1Q9BRV3 221 aa11.14□□□□□ -0.63
NUP54-213ENST00000513352 TRBV19A0A075B6N1 114 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 NBEAP1P0C6P0 100 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 IGHV4-30-4P0DP06 118 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 HLA-DMBP28068 263 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 FHITP49789 147 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 ZNF726P1Q15940 193 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 FXYD5Q96DB9 178 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 ZNF503Q96F45 646 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 C19orf73Q9NVV2 129 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 PLA2G2EQ9NZK7 142 aa11.13□□□□□ -0.63
NUP54-213ENST00000513352 MAP1LC3B2A6NCE7 125 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 KNCNA6PVL3 124 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 CXorf1O96002 111 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 STAG3L2P0CL84 134 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 STAG3L3P0CL85 134 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 GCHFRP30047 84 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 FGF8P55075 233 aaPredicted RBP11.12□□□□□ -0.63
NUP54-213ENST00000513352 FAM74A1Q5RGS3 127 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 ALKAL2Q6UX46 152 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 C20orf173Q96LM9 149 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 FAM110AQ9BQ89 295 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 MAP1LC3BQ9GZQ8 125 aa11.12□□□□□ -0.63
NUP54-213ENST00000513352 ZNF331Q9NQX6 463 aaPredicted RBP11.12□□□□□ -0.63
NUP54-213ENST00000513352 TRAV8-2A0A0B4J237 113 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 A0A1B0GV50 99 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 PSG9Q00887 426 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 ACTL10Q5JWF8 245 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 DPPA3Q6W0C5 159 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 STHQ8IWL8 128 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 PHYHIPLQ96FC7 376 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 AAMDCQ9H7C9 122 aa11.11□□□□□ -0.63
NUP54-213ENST00000513352 AGRNO00468 2067 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 ZNF253O75346 499 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 PRB4P10163 310 aaPredicted RBP11.1□□□□□ -0.63
NUP54-213ENST00000513352 RPL35AP18077 110 aaKnown RBP11.1□□□□□ -0.63
NUP54-213ENST00000513352 SULT1A2P50226 295 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 RAB5CP51148 216 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 DEFB1P60022 68 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 PDE6HQ13956 83 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 PSG3Q16557 428 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 SFT2D1Q8WV19 159 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 SAT2Q96F10 170 aaPredicted RBP11.1□□□□□ -0.63
NUP54-213ENST00000513352 CITED4Q96RK1 184 aa11.1□□□□□ -0.63
NUP54-213ENST00000513352 F6UB75 175 aa11.09□□□□□ -0.63
NUP54-213ENST00000513352 NDUFB4O95168 129 aa11.09□□□□□ -0.63
NUP54-213ENST00000513352 RANP62826 216 aaKnown RBP11.09□□□□□ -0.63
NUP54-213ENST00000513352 ICAM4Q14773 271 aa11.09□□□□□ -0.63
NUP54-213ENST00000513352 EBLN2Q6P2I7 272 aa11.09□□□□□ -0.63
NUP54-213ENST00000513352 EXOC3-AS1Q8N2X6 119 aa11.09□□□□□ -0.63
NUP54-213ENST00000513352 TMEM167BQ9NRX6 74 aa11.09□□□□□ -0.63
NUP54-213ENST00000513352 ZNF705FA8MVS1 300 aaPredicted RBP11.08□□□□□ -0.64
NUP54-213ENST00000513352 ZNF705EA8MWA4 302 aaPredicted RBP11.08□□□□□ -0.64
NUP54-213ENST00000513352 IGKV3-20P01619 116 aa11.08□□□□□ -0.64
NUP54-213ENST00000513352 H2AFB1P0C5Y9 115 aa11.08□□□□□ -0.64
NUP54-213ENST00000513352 FRMD6-AS1P0C7T7 363 aa11.08□□□□□ -0.64
NUP54-213ENST00000513352 RPUSD4Q96CM3 377 aaKnown RBP11.08□□□□□ -0.64
NUP54-213ENST00000513352 Q9H3A6 140 aa11.08□□□□□ -0.64
NUP54-213ENST00000513352 TMPRSS5Q9H3S3 457 aa11.08□□□□□ -0.64
NUP54-213ENST00000513352 CLEC5AQ9NY25 188 aa11.08□□□□□ -0.64
NUP54-213ENST00000513352 LOC102724200A0A096LPH7 203 aaPredicted RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 RBMY1BA6NDE4 496 aaKnown RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 RBMY1EA6NEQ0 496 aaKnown RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 RBMY1DP0C7P1 496 aaKnown RBP11.07□□□□□ -0.64
NUP54-213ENST00000513352 ZNF705DP0CH99 300 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms