RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PSMB3P49720 205 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 LCN15Q6UWW0 184 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 RAB24Q969Q5 203 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 FAM110AQ9BQ89 295 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 PAXXQ9BUH6 204 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 OR51M1Q9H341 326 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 ISLRO14498 428 aa22.03■■□□□ 1.12
LIMCH1-211ENST00000509638 PSMG4Q5JS54 123 aa22.03■■□□□ 1.12
LIMCH1-211ENST00000509638 DEFB125Q8N687 156 aa22.03■■□□□ 1.12
LIMCH1-211ENST00000509638 ZNF503Q96F45 646 aa22.03■■□□□ 1.12
LIMCH1-211ENST00000509638 ACTR3CQ9C0K3 210 aaPredicted RBP22.03■■□□□ 1.12
LIMCH1-211ENST00000509638 SLC17A3O00476 420 aa22.02■■□□□ 1.12
LIMCH1-211ENST00000509638 ID1P41134 155 aa22.02■■□□□ 1.12
LIMCH1-211ENST00000509638 DEFB131AP59861 70 aa22.02■■□□□ 1.12
LIMCH1-211ENST00000509638 SSX7Q7RTT5 188 aa22.02■■□□□ 1.12
LIMCH1-211ENST00000509638 ZNF586Q9NXT0 402 aa22.02■■□□□ 1.12
LIMCH1-211ENST00000509638 PLA2G2EQ9NZK7 142 aa22.02■■□□□ 1.12
LIMCH1-211ENST00000509638 UBE2L3P68036 154 aaKnown RBP22.01■■□□□ 1.11
LIMCH1-211ENST00000509638 APRG1Q8IVJ8 170 aa22.01■■□□□ 1.11
LIMCH1-211ENST00000509638 FXYD5Q96DB9 178 aa22.01■■□□□ 1.11
LIMCH1-211ENST00000509638 HIST1H1EP10412 219 aaKnown RBP22■■□□□ 1.11
LIMCH1-211ENST00000509638 CMC4P56277 68 aaPredicted RBP22■■□□□ 1.11
LIMCH1-211ENST00000509638 ZNF726P1Q15940 193 aa22■■□□□ 1.11
LIMCH1-211ENST00000509638 ZNF124Q15973 351 aa22■■□□□ 1.11
LIMCH1-211ENST00000509638 GUK1Q16774 197 aa22■■□□□ 1.11
LIMCH1-211ENST00000509638 EIF5AL1Q6IS14 154 aaKnown RBP22■■□□□ 1.11
LIMCH1-211ENST00000509638 LRRC20Q8TCA0 184 aa22■■□□□ 1.11
LIMCH1-211ENST00000509638 MRAPQ8TCY5 172 aa22■■□□□ 1.11
LIMCH1-211ENST00000509638 TRAV8-2A0A0B4J237 113 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 UMAD1C9J7I0 102 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 ARL14EPLP0DKL9 152 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 IGHV4-30-4P0DP06 118 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 IGFL4Q6B9Z1 124 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 PQLC2Q6ZP29 291 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 BLNKQ8WV28 456 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 RNF141Q8WVD5 230 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 LINC00052Q96N35 136 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 TRBV19A0A075B6N1 114 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 CTXND1A0A1B0GTU2 59 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 STAG3L2P0CL84 134 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 STAG3L3P0CL85 134 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 FHITP49789 147 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 RNF182Q8N6D2 247 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 SLC50A1Q9BRV3 221 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 SRD5A3Q9H8P0 318 aa21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 ZNF331Q9NQX6 463 aaPredicted RBP21.99■■□□□ 1.11
LIMCH1-211ENST00000509638 C20orf173Q96LM9 149 aa21.98■■□□□ 1.11
LIMCH1-211ENST00000509638 PRKDCP78527 4128 aaKnown RBP21.97■■□□□ 1.11
LIMCH1-211ENST00000509638 FAM213BQ8TBF2 198 aa21.97■■□□□ 1.11
LIMCH1-211ENST00000509638 SAT2Q96F10 170 aaPredicted RBP21.97■■□□□ 1.11
LIMCH1-211ENST00000509638 CITED4Q96RK1 184 aa21.97■■□□□ 1.11
LIMCH1-211ENST00000509638 NBEAP1P0C6P0 100 aa21.96■■□□□ 1.11
LIMCH1-211ENST00000509638 PDE6HQ13956 83 aa21.96■■□□□ 1.11
LIMCH1-211ENST00000509638 HLA-DMBP28068 263 aa21.95■■□□□ 1.11
LIMCH1-211ENST00000509638 DEFB121Q5J5C9 76 aa21.95■■□□□ 1.11
LIMCH1-211ENST00000509638 TUBA4BQ9H853 241 aa21.95■■□□□ 1.11
LIMCH1-211ENST00000509638 AGRNO00468 2067 aa21.95■■□□□ 1.1
LIMCH1-211ENST00000509638 ZNF253O75346 499 aa21.95■■□□□ 1.1
LIMCH1-211ENST00000509638 NDUFB4O95168 129 aa21.95■■□□□ 1.1
LIMCH1-211ENST00000509638 PHYHIPLQ96FC7 376 aa21.95■■□□□ 1.1
LIMCH1-211ENST00000509638 CXorf1O96002 111 aa21.94■■□□□ 1.1
LIMCH1-211ENST00000509638 MAP1LC3B2A6NCE7 125 aa21.93■■□□□ 1.1
LIMCH1-211ENST00000509638 DEFB1P60022 68 aa21.93■■□□□ 1.1
LIMCH1-211ENST00000509638 DPPA3Q6W0C5 159 aa21.93■■□□□ 1.1
LIMCH1-211ENST00000509638 MAP1LC3BQ9GZQ8 125 aa21.93■■□□□ 1.1
LIMCH1-211ENST00000509638 GCHFRP30047 84 aa21.92■■□□□ 1.1
LIMCH1-211ENST00000509638 FAM74A1Q5RGS3 127 aa21.92■■□□□ 1.1
LIMCH1-211ENST00000509638 IQCF2Q8IXL9 164 aa21.92■■□□□ 1.1
LIMCH1-211ENST00000509638 KNCNA6PVL3 124 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 A8MZ25 164 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 FGF8P55075 233 aaPredicted RBP21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 ZNF738Q8NE65 137 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 FRMD6-AS1P0C7T7 363 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 SULT1A2P50226 295 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 ACTL10Q5JWF8 245 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 ALKAL2Q6UX46 152 aa21.91■■□□□ 1.1
LIMCH1-211ENST00000509638 RAB5CP51148 216 aa21.9■■□□□ 1.1
LIMCH1-211ENST00000509638 PSG9Q00887 426 aa21.9■■□□□ 1.1
LIMCH1-211ENST00000509638 PSG3Q16557 428 aa21.9■■□□□ 1.1
LIMCH1-211ENST00000509638 EXOC3-AS1Q8N2X6 119 aa21.9■■□□□ 1.1
LIMCH1-211ENST00000509638 AAMDCQ9H7C9 122 aa21.89■■□□□ 1.09
LIMCH1-211ENST00000509638 RBMY1BA6NDE4 496 aaKnown RBP21.88■■□□□ 1.09
LIMCH1-211ENST00000509638 RBMY1EA6NEQ0 496 aaKnown RBP21.88■■□□□ 1.09
LIMCH1-211ENST00000509638 F6UB75 175 aa21.88■■□□□ 1.09
LIMCH1-211ENST00000509638 RBMY1DP0C7P1 496 aaKnown RBP21.88■■□□□ 1.09
LIMCH1-211ENST00000509638 GDF5OSQ5U4N7 250 aa21.88■■□□□ 1.09
LIMCH1-211ENST00000509638 FOXI2Q6ZQN5 318 aa21.88■■□□□ 1.09
LIMCH1-211ENST00000509638 PRB4P10163 310 aaPredicted RBP21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 RANP62826 216 aaKnown RBP21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 STHQ8IWL8 128 aa21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 SFT2D1Q8WV19 159 aa21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 SAV1Q9H4B6 383 aaPredicted RBP21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 TMEM167BQ9NRX6 74 aa21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 CLEC5AQ9NY25 188 aa21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 RPUSD4Q96CM3 377 aaKnown RBP21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 Q9H3A6 140 aa21.87■■□□□ 1.09
LIMCH1-211ENST00000509638 ZNF705FA8MVS1 300 aaPredicted RBP21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 M0R3E3 92 aa21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 HLA-DRB4P13762 266 aa21.86■■□□□ 1.09
LIMCH1-211ENST00000509638 RPL35AP18077 110 aaKnown RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms