RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IGHV3-73A0A0B4J1V6 119 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 LY6G6EA0A0G2JKS1 128 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 UBE2E1P51965 193 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 VGLL1Q99990 258 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 U3KQA8 63 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 A0A0U1RRA0 63 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 NDUFB8O95169 186 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 PRR31Q5SQ13 230 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 IGFL3Q6UXB1 125 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 LSM4Q9Y4Z0 139 aaKnown RBP13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 GGTLC3B5MD39 225 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 E9PQ18 207 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 FAM110DQ8TAY7 271 aaPredicted RBP13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 NDUFA4L2Q9NRX3 87 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 CKS1BP61024 79 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 YPEL3P61236 119 aaPredicted RBP13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 TMEM158Q8WZ71 300 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 RASL10AQ92737 203 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 ZNF492Q9P255 531 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 PLXNA4Q9HCM2 1894 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 K7ENP7 123 aa13.35□□□□□ -0.27
PCDHA1-203ENST00000504120 hDV102S1A0JD36 115 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 GATA3P23771 443 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 PYY3Q5JQD4 70 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 ZNF833PQ6ZTB9 187 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 TMEM75Q8N9X5 138 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 SPOCK3Q9BQ16 436 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 AMN1Q8IY45 258 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 MYLKQ15746 1914 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 TRAV8-4A0A0B4J246 113 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 KLHL30-AS1Q8NEE0 82 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 FAM231BA6NCW3 169 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 LCNL1Q6ZST4 164 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 TICRRQ7Z2Z1 1910 aa13.34□□□□□ -0.27
PCDHA1-203ENST00000504120 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.33□□□□□ -0.27
PCDHA1-203ENST00000504120 S100A7L2Q5SY68 101 aa13.33□□□□□ -0.27
PCDHA1-203ENST00000504120 Q6ZR03 302 aa13.33□□□□□ -0.27
PCDHA1-203ENST00000504120 RNF166Q96A37 237 aaPredicted RBP13.33□□□□□ -0.27
PCDHA1-203ENST00000504120 OVOL3O00110 214 aa13.33□□□□□ -0.28
PCDHA1-203ENST00000504120 FXYD7P58549 80 aa13.33□□□□□ -0.28
PCDHA1-203ENST00000504120 SPTBN2O15020 2390 aa13.33□□□□□ -0.28
PCDHA1-203ENST00000504120 LINC00479Q96M42 142 aa13.33□□□□□ -0.28
PCDHA1-203ENST00000504120 MPDZO75970 2070 aa13.33□□□□□ -0.28
PCDHA1-203ENST00000504120 MRPL52Q86TS9 123 aaKnown RBP13.33□□□□□ -0.28
PCDHA1-203ENST00000504120 NCOR1O75376 2440 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 Q0VG73 95 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 ZNRD1Q9P1U0 126 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 PLXNA2O75051 1894 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 PAX9P55771 341 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 CT83Q5H943 113 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 A6NNC1 897 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 MSMBP08118 114 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 CEACAM8P31997 349 aaPredicted RBP13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 ERCC8Q13216 396 aa13.32□□□□□ -0.28
PCDHA1-203ENST00000504120 LRRK1Q38SD2 2015 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 ATP6V0E1O15342 81 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 LINC00311Q8N616 119 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 SIGMAR1Q99720 223 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 RSPO3Q9BXY4 272 aaPredicted RBP13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 LIME1Q9H400 295 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 C17orf58Q2M2W7 97 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 ZC2HC1BQ5TFG8 222 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 WDR86Q86TI4 376 aa13.31□□□□□ -0.28
PCDHA1-203ENST00000504120 SMKR1H3BMG3 65 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 ARMS2P0C7Q2 107 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 RPL35AP18077 110 aaKnown RBP13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 PHLDA1Q8WV24 401 aaPredicted RBP13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 C9JQL5 133 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 WISP1O95388 367 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 TDGF1P3P51864 188 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 VOPP1Q96AW1 172 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 JPT2Q9H910 190 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 TEX36Q5VZQ5 186 aa13.3□□□□□ -0.28
PCDHA1-203ENST00000504120 TNFRSF6BO95407 300 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 IGHV3-53P01767 116 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 SYNJ2BPP57105 145 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 PRR30Q53SZ7 412 aaPredicted RBP13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 A0A087X0K7 114 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 TP53BP1Q12888 1972 aaPredicted RBP13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 ACACAQ13085 2346 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 PAX4O43316 350 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 MPV17L2Q567V2 206 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 IL17RELQ6ZVW7 336 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 TRBV19A0A075B6N1 114 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 A0A087WWL8 130 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 IGLV1-44P01699 117 aa13.29□□□□□ -0.28
PCDHA1-203ENST00000504120 PFN1P07737 140 aaKnown RBP13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 LOXP28300 417 aaPredicted RBP13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 IGHV1-69DA0A0B4J2H0 117 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 IGKV1-39P01597 117 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 IGHV1-69P01742 117 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 IGKV1D-39P04432 117 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 CFHR2P36980 270 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 LY6G5BQ8NDX9 201 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 C1orf159Q96HA4 380 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 PI4KAP42356 2102 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 SPTBN1Q01082 2364 aaKnown RBP13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 TRPT1Q86TN4 253 aaKnown RBP13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 ZNF524Q96C55 264 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 UBE2E2Q96LR5 201 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms