RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MBNL3Q9NUK0 354 aaKnown RBP8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 YPEL1O60688 119 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SPINK8P0C7L1 97 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 RPL27AP46776 148 aaKnown RBP8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 MEF2CQ06413 473 aaPredicted RBP8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C16orf54Q6UWD8 224 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TEX29Q8N6K0 151 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 FAM169BQ8N8A8 192 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ZNF479Q96JC4 524 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 YPEL2Q96QA6 119 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GGTLC1Q9BX51 225 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 H3BRM9 83 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 NPPCP23582 126 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CNTFRP26992 372 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CACNG7P62955 275 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SLAQ13239 276 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SFTA2Q6UW10 78 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SRSF12Q8WXF0 261 aaKnown RBP8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 LSM4Q9Y4Z0 139 aaKnown RBP8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IGHV3-66A0A0C4DH42 116 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TREML4Q6UXN2 200 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 OR4A5Q8NH83 315 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IFI27L2Q9H2X8 130 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 EXPH5Q8NEV8 1989 aa8.71□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TRAV26-1A0A087WT03 109 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 BCL6BQ8N143 479 aaPredicted RBP8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TTC9CQ8N5M4 171 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 OR4C13Q8NGP0 309 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 OR9G4Q8NGQ1 327 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 NRGNQ92686 78 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 MRAP2Q96G30 205 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RPUSD1Q9UJJ7 312 aaKnown RBP8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PRRC2AP48634 2157 aaKnown RBP8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PEX7O00628 323 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 FOXH1O75593 365 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CEACAM4O75871 244 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 IL4P05112 153 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CKS2P33552 79 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 KRTAP27-1Q3LI81 207 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 EBLN2Q6P2I7 272 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 STXBP6Q8NFX7 210 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 LY96Q9Y6Y9 160 aa8.71□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TEX48A0A1B0GUV7 120 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CGB1A6NKQ9 187 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 IGLC1P0CG04 106 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CEACAM3P40198 252 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 LINC00312Q9Y6C7 94 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CDSNQ15517 529 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 NUP35Q8NFH5 326 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 V9GYV3 84 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SNCGO76070 127 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 KIR2DS2P43631 304 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 BRD3OSQ6XYD6 125 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 DUX5Q96PT3 197 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 ASCL2Q99929 193 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TPSG1Q9NRR2 321 aa8.7□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 FRMD6-AS1P0C7T7 363 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RPP21Q9H633 154 aaKnown RBP8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PCSK5Q92824 1860 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 DSCAMO60469 2012 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 F2RL2O00254 374 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TIMM23O14925 209 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TMEM219Q86XT9 240 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 MRPL16Q9NX20 251 aaKnown RBP8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TRAV5A0A0B4J249 113 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 G3V4G9 280 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SMIM17P0DL12 118 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RPL7P18124 248 aaKnown RBP8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CRYBA4P53673 196 aa8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 DAZAP2Q15038 168 aaPredicted RBP8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RBPMS2Q6ZRY4 209 aaKnown RBP8.69□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 NBEAP1P0C6P0 100 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RPL13AP40429 203 aaKnown RBP8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 C17orf58Q2M2W7 97 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 MYOZ3Q8TDC0 251 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SLC25A33Q9BSK2 321 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CTSZQ9UBR2 303 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUT8 65 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TMEM238LA0A1B0GVL6 79 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 A6NJY4 79 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SRRM4A7MD48 611 aaKnown RBP8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 VWC2Q2TAL6 325 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 C19orf24Q9BVV8 132 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TMEM160Q9NX00 188 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 AREGP15514 252 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RASL11AQ6T310 242 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 MGST2Q99735 147 aa8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SOX21Q9Y651 276 aaPredicted RBP8.68□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 C15orf65H3BRN8 121 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PYYP10082 97 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 OR4F17Q8NGA8 305 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TMEM133Q9H2Q1 129 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RABAC1Q9UI14 185 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 FLNCQ14315 2725 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPM0 123 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RHOGP84095 191 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 BPESC1Q9GZL8 116 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 ASH1LQ9NR48 2969 aaKnown RBP8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TRBV20OR9-2A0A075B6H5 130 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 IGLV3-9A0A075B6K5 115 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms