RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 GPR82Q96P67 336 aa1.95□□□□□ -2.1
VPS13A-210ENST00000471439 C7orf50Q9BRJ6 194 aaKnown RBP1.95□□□□□ -2.1
VPS13A-210ENST00000471439 C1orf50Q9BV19 199 aa1.95□□□□□ -2.1
VPS13A-210ENST00000471439 ARV1Q9H2C2 271 aa1.95□□□□□ -2.1
VPS13A-210ENST00000471439 NMNAT1Q9HAN9 279 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-210ENST00000471439 IFNKQ9P0W0 207 aa1.95□□□□□ -2.1
VPS13A-210ENST00000471439 RABAC1Q9UI14 185 aa1.95□□□□□ -2.1
VPS13A-210ENST00000471439 KLF12Q9Y4X4 402 aa1.95□□□□□ -2.1
VPS13A-210ENST00000471439 ZNF98A6NK75 572 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 H3BMM0 161 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 PSPHP1O15172 72 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 ATP8B1O43520 1251 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 SULT1C4O75897 302 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 FADS2O95864 444 aaKnown RBP1.94□□□□□ -2.1
VPS13A-210ENST00000471439 NRASP01111 189 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 GCGP01275 180 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 RNASE2P10153 161 aaKnown RBP1.94□□□□□ -2.1
VPS13A-210ENST00000471439 PRKACAP17612 351 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 TAS2R43P59537 309 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 DSTNP60981 165 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 KRR1Q13601 381 aaKnown RBP1.94□□□□□ -2.1
VPS13A-210ENST00000471439 SP6Q3SY56 376 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 SDIM1Q6ZPB5 146 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 DCXRQ7Z4W1 244 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 RBM45Q8IUH3 476 aaKnown RBP1.94□□□□□ -2.1
VPS13A-210ENST00000471439 FAM58AQ8N1B3 248 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 OR51T1Q8NGJ9 327 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 IFT81Q8WYA0 676 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 SLAMF6Q96DU3 332 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 PLAC8Q9NZF1 115 aa1.94□□□□□ -2.1
VPS13A-210ENST00000471439 SAMHD1Q9Y3Z3 626 aaKnown RBP1.94□□□□□ -2.1
VPS13A-210ENST00000471439 IGHV6-1A0A0B4J1U7 121 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 TRAV2A0A0B4J234 112 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 TRAV1-1A0A0B4J248 108 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 IGKV1-6A0A0C4DH72 117 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 C15orf65H3BRN8 121 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 H7C2Y5 167 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 IGKV1-39P01597 117 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 IGKV1D-39P04432 117 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 CRABP1P29762 137 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 PPP1CCP36873 323 aaKnown RBP1.93□□□□□ -2.1
VPS13A-210ENST00000471439 CDKN2CP42773 168 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 CASP8Q14790 479 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 COX6B2Q6YFQ2 88 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 CTAGE3PQ8IX95 158 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 TTC9CQ8N5M4 171 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 LINC00337Q8N6G1 96 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 SLC25A29Q8N8R3 303 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 C9orf163Q8N9P6 203 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 OR8J2Q8NGG1 315 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 CDKL2Q92772 493 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 MAL2Q969L2 176 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 ARL11Q969Q4 196 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 MRPL57Q9BQC6 102 aaKnown RBP1.93□□□□□ -2.1
VPS13A-210ENST00000471439 SND1-IT1Q9HBX3 110 aa1.93□□□□□ -2.1
VPS13A-210ENST00000471439 TRBV7-1A0A0A6YYK4 115 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 A0A1W2PQL4 384 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-210ENST00000471439 FAM159BA6NKW6 160 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 ZNF878C9JN71 531 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 NDUFA4O00483 81 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 NAPSAO96009 420 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 GYPBP06028 91 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 CD14P08571 375 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 PPIBP23284 216 aaKnown RBP1.92□□□□□ -2.1
VPS13A-210ENST00000471439 HSD11B1P28845 292 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 PLTPP55058 493 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 RPL18AQ02543 176 aaKnown RBP1.92□□□□□ -2.1
VPS13A-210ENST00000471439 Q3ZCU0 254 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 GLT8D1Q68CQ7 371 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 PRSS54Q6PEW0 395 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 DNM1P34Q6PK57 102 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 TBPL2Q6SJ96 375 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 EPGNQ6UW88 154 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 ZNF833PQ6ZTB9 187 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 SLC25A26Q70HW3 274 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 VTCN1Q7Z7D3 282 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 OR4D11Q8NGI4 311 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 Q8TAT8 98 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 ZC2HC1AQ96GY0 325 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 SPRR2FQ96RM1 72 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 TSNAXQ99598 290 aaKnown RBP1.92□□□□□ -2.1
VPS13A-210ENST00000471439 FIS1Q9Y3D6 152 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 ICOSQ9Y6W8 199 aa1.92□□□□□ -2.1
VPS13A-210ENST00000471439 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 MUC21A0A0G2JKD1 596 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 TVP23AA6NH52 213 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 OR5H14A6NHG9 310 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 CENPXA8MT69 81 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 IGKV1-16P04430 117 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 ISG15P05161 165 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 SAA2P0DJI9 122 aaPredicted RBP1.91□□□□□ -2.1
VPS13A-210ENST00000471439 GZMHP20718 246 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 GALR1P47211 349 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 HCCSP53701 268 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 IL15RAQ13261 267 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 PSMG4Q5JS54 123 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 DPPA3Q6W0C5 159 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 TMEM136Q6ZRR5 245 aa1.91□□□□□ -2.1
VPS13A-210ENST00000471439 Q8IYB0 196 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 151.8 ms