RNA–Protein interactions for RNA: ENST00000466624.1

GPC1-207, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 782 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-207ENST00000466624 PDE6HQ13956 83 aa11.9□□□□□ -0.5
GPC1-207ENST00000466624 PQLC2Q6ZP29 291 aa11.9□□□□□ -0.5
GPC1-207ENST00000466624 C16orf92Q96LL3 132 aa11.9□□□□□ -0.5
GPC1-207ENST00000466624 PAXXQ9BUH6 204 aa11.9□□□□□ -0.5
GPC1-207ENST00000466624 H3BQ15 152 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 OR7C2O60412 319 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 ZNF688P0C7X2 276 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 STAG3L2P0CL84 134 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 STAG3L3P0CL85 134 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 RAB24Q969Q5 203 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 SAT2Q96F10 170 aaPredicted RBP11.89□□□□□ -0.51
GPC1-207ENST00000466624 ZNF503Q96F45 646 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 ZNF586Q9NXT0 402 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 CLEC5AQ9NY25 188 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 UBQLN2Q9UHD9 624 aa11.89□□□□□ -0.51
GPC1-207ENST00000466624 TRBV19A0A075B6N1 114 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 CTXND1A0A1B0GTU2 59 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 IGHV4-30-4P0DP06 118 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 PYYP10082 97 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 DEFB131AP59861 70 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 DPPA3Q6W0C5 159 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 DEFB125Q8N687 156 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 LRRC20Q8TCA0 184 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 RNF141Q8WVD5 230 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 TMED6Q8WW62 240 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 FXYD5Q96DB9 178 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 ZNF331Q9NQX6 463 aaPredicted RBP11.88□□□□□ -0.51
GPC1-207ENST00000466624 MEGF8Q7Z7M0 2845 aa11.88□□□□□ -0.51
GPC1-207ENST00000466624 TRAV8-2A0A0B4J237 113 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 RAB5CP51148 216 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 UBE2L3P68036 154 aaKnown RBP11.87□□□□□ -0.51
GPC1-207ENST00000466624 PSMG4Q5JS54 123 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 MRAPQ8TCY5 172 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 PHYHIPLQ96FC7 376 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 WFDC10AQ9H1F0 79 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 PLA2G2EQ9NZK7 142 aa11.87□□□□□ -0.51
GPC1-207ENST00000466624 NBEAP1P0C6P0 100 aa11.86□□□□□ -0.51
GPC1-207ENST00000466624 PSG9Q00887 426 aa11.86□□□□□ -0.51
GPC1-207ENST00000466624 ZNF726P1Q15940 193 aa11.86□□□□□ -0.51
GPC1-207ENST00000466624 SRD5A3Q9H8P0 318 aa11.86□□□□□ -0.51
GPC1-207ENST00000466624 BOLA2-SMG1P6H3BVE0 249 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 SLC17A3O00476 420 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 NDUFB4O95168 129 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 CXorf1O96002 111 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 OR10J4P0C629 311 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 ARL14EPLP0DKL9 152 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 PSG3Q16557 428 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 SSX7Q7RTT5 188 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 APRG1Q8IVJ8 170 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 LYPD1Q8N2G4 141 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 SUN5Q8TC36 379 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 CITED4Q96RK1 184 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 TUBA4BQ9H853 241 aa11.85□□□□□ -0.51
GPC1-207ENST00000466624 HMGB3O15347 200 aaKnown RBP11.84□□□□□ -0.51
GPC1-207ENST00000466624 SNRPCP09234 159 aaKnown RBP11.84□□□□□ -0.51
GPC1-207ENST00000466624 SULT1A2P50226 295 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 DEFB121Q5J5C9 76 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 LINC00322Q6ZN03 302 aaPredicted RBP11.84□□□□□ -0.51
GPC1-207ENST00000466624 FOXI2Q6ZQN5 318 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 BLNKQ8WV28 456 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 MRPL53Q96EL3 112 aaKnown RBP11.84□□□□□ -0.51
GPC1-207ENST00000466624 C20orf173Q96LM9 149 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 LINC00052Q96N35 136 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 TMEM167BQ9NRX6 74 aa11.84□□□□□ -0.51
GPC1-207ENST00000466624 H3BTX0 84 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 EIF3GO75821 320 aaKnown RBP eCLIP11.83□□□□□ -0.52
GPC1-207ENST00000466624 GCHFRP30047 84 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 ZNF124Q15973 351 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 RNF182Q8N6D2 247 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 MBD3L1Q8WWY6 194 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 SAV1Q9H4B6 383 aaPredicted RBP11.83□□□□□ -0.52
GPC1-207ENST00000466624 AAMDCQ9H7C9 122 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 PRELID1Q9Y255 219 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 BOLA1Q9Y3E2 137 aa11.83□□□□□ -0.52
GPC1-207ENST00000466624 AGRNO00468 2067 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 MAP1LC3B2A6NCE7 125 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 FRMD6-AS1P0C7T7 363 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 HLA-DRB4P13762 266 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 FHITP49789 147 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 IGFL4Q6B9Z1 124 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 FAM213BQ8TBF2 198 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 MAP1LC3BQ9GZQ8 125 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 HLA-DRB4X5D2U9 266 aa11.82□□□□□ -0.52
GPC1-207ENST00000466624 LOC102724200A0A096LPH7 203 aaPredicted RBP11.81□□□□□ -0.52
GPC1-207ENST00000466624 HLA-DMBP28068 263 aa11.81□□□□□ -0.52
GPC1-207ENST00000466624 EBLN2Q6P2I7 272 aa11.81□□□□□ -0.52
GPC1-207ENST00000466624 TRPT1Q86TN4 253 aaKnown RBP11.81□□□□□ -0.52
GPC1-207ENST00000466624 STHQ8IWL8 128 aa11.81□□□□□ -0.52
GPC1-207ENST00000466624 ZNF738Q8NE65 137 aa11.81□□□□□ -0.52
GPC1-207ENST00000466624 CLUHP3Q96NS8 147 aa11.81□□□□□ -0.52
GPC1-207ENST00000466624 KIR2DL5BA0A0G2JN68 375 aa11.8□□□□□ -0.52
GPC1-207ENST00000466624 KIR2DL5BA0A0G2JPC4 375 aa11.8□□□□□ -0.52
GPC1-207ENST00000466624 A0A0J9YX75 114 aa11.8□□□□□ -0.52
GPC1-207ENST00000466624 RBMY1BA6NDE4 496 aaKnown RBP11.8□□□□□ -0.52
GPC1-207ENST00000466624 RBMY1EA6NEQ0 496 aaKnown RBP11.8□□□□□ -0.52
GPC1-207ENST00000466624 KNCNA6PVL3 124 aa11.8□□□□□ -0.52
GPC1-207ENST00000466624 H3BMM0 161 aa11.8□□□□□ -0.52
GPC1-207ENST00000466624 H2AFB1P0C5Y9 115 aa11.8□□□□□ -0.52
GPC1-207ENST00000466624 RBMY1DP0C7P1 496 aaKnown RBP11.8□□□□□ -0.52
GPC1-207ENST00000466624 ACTL10Q5JWF8 245 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 216.3 ms