RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TMEM30BQ3MIR4 351 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 TMEM133Q9H2Q1 129 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 MS4A6AQ9H2W1 248 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 RABAC1Q9UI14 185 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 ARHGAP32A7KAX9 2087 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 TMEM97Q5BJF2 176 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 IGF2-ASQ6U949 168 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 C16orf54Q6UWD8 224 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 FA2HQ7L5A8 372 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 PPIAL4EA0A075B759 164 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 C17orf100A8MU93 164 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 PPIAL4FP0DN26 164 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 MEGF9Q9H1U4 602 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 FBXL15Q9H469 300 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 NBASA2RRP1 2371 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 D6R8Y8 96 aa14.6□□□□□ -0.07
CCDC3-201ENST00000378825 AMN1Q8IY45 258 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 RAB37Q96AX2 223 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 PEF1Q9UBV8 284 aaKnown RBP14.59□□□□□ -0.07
CCDC3-201ENST00000378825 TEX22C9J3V5 150 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 SMKR1H3BMG3 65 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 TMEM178BH3BS89 294 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 IGKV1-17P01599 117 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 DLX6P56179 175 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 FAM57AQ8TBR7 257 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 SIGLEC9Q9Y336 463 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 WNK2Q9Y3S1 2297 aa14.59□□□□□ -0.07
CCDC3-201ENST00000378825 A0A0G2JNJ9 132 aa14.58□□□□□ -0.07
CCDC3-201ENST00000378825 NDUFB3O43676 98 aa14.58□□□□□ -0.07
CCDC3-201ENST00000378825 HOXB4P17483 251 aaPredicted RBP14.58□□□□□ -0.07
CCDC3-201ENST00000378825 FAM71F2Q6NXP2 309 aa14.58□□□□□ -0.07
CCDC3-201ENST00000378825 OR10AG1Q8NH19 301 aa14.58□□□□□ -0.07
CCDC3-201ENST00000378825 SIGLEC8Q9NYZ4 499 aa14.58□□□□□ -0.07
CCDC3-201ENST00000378825 Q9UFV3 132 aa14.58□□□□□ -0.07
CCDC3-201ENST00000378825 H3BUT2 72 aa14.58□□□□□ -0.08
CCDC3-201ENST00000378825 IGHV1-8P0DP01 117 aa14.58□□□□□ -0.08
CCDC3-201ENST00000378825 CACNG7P62955 275 aa14.58□□□□□ -0.08
CCDC3-201ENST00000378825 TM4SF20Q53R12 229 aa14.58□□□□□ -0.08
CCDC3-201ENST00000378825 ABHD17AQ96GS6 310 aa14.58□□□□□ -0.08
CCDC3-201ENST00000378825 F11RQ9Y624 299 aaKnown RBP14.58□□□□□ -0.08
CCDC3-201ENST00000378825 CACNA1BQ00975 2339 aa14.58□□□□□ -0.08
CCDC3-201ENST00000378825 GAGE10A6NGK3 116 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 PLP1P60201 277 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 NHLH1Q02575 133 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 PVRIGQ6DKI7 326 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 THYN1Q9P016 225 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 PSG8Q9UQ74 426 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 PCP2Q8IVA1 136 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 RIGQ13278 110 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 KLF17Q5JT82 389 aaPredicted RBP14.57□□□□□ -0.08
CCDC3-201ENST00000378825 SIGLEC15Q6ZMC9 328 aa14.57□□□□□ -0.08
CCDC3-201ENST00000378825 TRBV19A0A075B6N1 114 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 CSN1S1P47710 185 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 LYZL1Q6UWQ5 148 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 LINC00311Q8N616 119 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 RASL11BQ9BPW5 248 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 CRYGBP07316 175 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 BSPH1Q075Z2 132 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 CSTL1Q9H114 145 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 NGBQ9NPG2 151 aa14.56□□□□□ -0.08
CCDC3-201ENST00000378825 ABCA4P78363 2273 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 I3L2K1 104 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 LGALS7P47929 136 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 PPP1R27Q86WC6 154 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 MC5RP33032 325 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 RPS20P60866 119 aaKnown RBP14.55□□□□□ -0.08
CCDC3-201ENST00000378825 TMEM155Q4W5P6 130 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 TMEM108Q6UXF1 575 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 TTTY13Q9BZ97 58 aa14.55□□□□□ -0.08
CCDC3-201ENST00000378825 PRR30Q53SZ7 412 aaPredicted RBP14.54□□□□□ -0.08
CCDC3-201ENST00000378825 UFSP1Q6NVU6 142 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 LYNX1G3V0Z9 82 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 C16orf97H3BN30 126 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 TNFRSF13BO14836 293 aaPredicted RBP14.54□□□□□ -0.08
CCDC3-201ENST00000378825 LYNX1P0DP58 116 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 COX7A1P24310 79 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 KIR3DS1Q14943 382 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 MED13LQ71F56 2210 aa14.54□□□□□ -0.08
CCDC3-201ENST00000378825 GAS8-AS1O95177 125 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 APOBEC3AP31941 199 aaPredicted RBP14.53□□□□□ -0.08
CCDC3-201ENST00000378825 PSG3Q16557 428 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 FER1L6-AS1Q8NA97 138 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 NMUP48645 174 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 SMIM15Q7Z3B0 74 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 PRELID3AQ96N28 172 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 TMEM14CQ9P0S9 112 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 DKK2Q9UBU2 259 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 INSIG2Q9Y5U4 225 aa14.53□□□□□ -0.08
CCDC3-201ENST00000378825 K7ERU9 68 aa14.52□□□□□ -0.08
CCDC3-201ENST00000378825 PRRG2O14669 202 aa14.52□□□□□ -0.08
CCDC3-201ENST00000378825 THBDP07204 575 aa14.52□□□□□ -0.08
CCDC3-201ENST00000378825 FCGR2BP31994 310 aaPredicted RBP14.52□□□□□ -0.08
CCDC3-201ENST00000378825 IGFL4Q6B9Z1 124 aa14.52□□□□□ -0.08
CCDC3-201ENST00000378825 IGHV1-3A0A0C4DH29 117 aa14.52□□□□□ -0.09
CCDC3-201ENST00000378825 IL4P05112 153 aa14.52□□□□□ -0.09
CCDC3-201ENST00000378825 C3orf36Q3SXR2 165 aa14.52□□□□□ -0.09
CCDC3-201ENST00000378825 C18orf15Q96N68 181 aa14.52□□□□□ -0.09
CCDC3-201ENST00000378825 SEC11AP67812 179 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 TMEM75Q8N9X5 138 aa14.51□□□□□ -0.09
CCDC3-201ENST00000378825 NUP37Q8NFH4 326 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms