RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 LINC01587Q99440 93 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 K7EP34 96 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 ATXN8Q156A1 80 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 BVES-AS1Q5T3Y7 98 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 DPH3P1Q9H4G8 78 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 ASPHD1Q5U4P2 390 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 LCNL1Q6ZST4 164 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 WFDC12Q8WWY7 111 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 PROK2Q9HC23 129 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 NDUFA4L2Q9NRX3 87 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 SPTA1P02549 2419 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 PRSS57Q6UWY2 283 aa12.88□□□□□ -0.35
COL17A1-202ENST00000369733 FAM104BQ5XKR9 115 aa12.87□□□□□ -0.35
COL17A1-202ENST00000369733 ITLN2Q8WWU7 325 aaPredicted RBP12.87□□□□□ -0.35
COL17A1-202ENST00000369733 TMEM8BA6NDV4 472 aa12.87□□□□□ -0.35
COL17A1-202ENST00000369733 BUB1B-PAK6H3BSN5 160 aa12.87□□□□□ -0.35
COL17A1-202ENST00000369733 CACNA1EQ15878 2313 aa12.87□□□□□ -0.35
COL17A1-202ENST00000369733 HAX1O00165 279 aa12.87□□□□□ -0.35
COL17A1-202ENST00000369733 RBMY1BA6NDE4 496 aaKnown RBP12.86□□□□□ -0.35
COL17A1-202ENST00000369733 RBMY1EA6NEQ0 496 aaKnown RBP12.86□□□□□ -0.35
COL17A1-202ENST00000369733 RBMY1DP0C7P1 496 aaKnown RBP12.86□□□□□ -0.35
COL17A1-202ENST00000369733 RBMY1A1P0DJD3 496 aaKnown RBP12.86□□□□□ -0.35
COL17A1-202ENST00000369733 RBMY1CP0DJD4 496 aa12.86□□□□□ -0.35
COL17A1-202ENST00000369733 ZNF503-AS2A6NEH8 195 aa12.86□□□□□ -0.35
COL17A1-202ENST00000369733 C8orf49Q96NF6 230 aa12.86□□□□□ -0.35
COL17A1-202ENST00000369733 CCL19Q99731 98 aa12.86□□□□□ -0.35
COL17A1-202ENST00000369733 CSTL1Q9H114 145 aa12.86□□□□□ -0.35
COL17A1-202ENST00000369733 Q6ZVH6 145 aa12.86□□□□□ -0.35
COL17A1-202ENST00000369733 C14orf178Q8N769 122 aaPredicted RBP12.86□□□□□ -0.35
COL17A1-202ENST00000369733 TSSC4Q9Y5U2 329 aaPredicted RBP12.86□□□□□ -0.35
COL17A1-202ENST00000369733 PRSS46E5RG02 174 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 SSBP2P81877 361 aaPredicted RBP12.85□□□□□ -0.35
COL17A1-202ENST00000369733 KLRD1Q13241 179 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 SRD5A1P18405 259 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 NPC2P61916 151 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 ZNF474Q6S9Z5 364 aaPredicted RBP12.85□□□□□ -0.35
COL17A1-202ENST00000369733 PLEKHB2Q96CS7 222 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 PDE6HQ13956 83 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 C5orf64Q2M2E5 130 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 A0A0U1RRA0 63 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 ERCC8Q13216 396 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 VWC2Q2TAL6 325 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 LYPD6Q86Y78 171 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 IGLC7A0M8Q6 106 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 NUPR1O60356 82 aa12.85□□□□□ -0.35
COL17A1-202ENST00000369733 SRSF6Q13247 344 aaKnown RBP12.85□□□□□ -0.35
COL17A1-202ENST00000369733 FER1L5A0AVI2 2057 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 TMEM249Q2WGJ8 235 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 NUP37Q8NFH4 326 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 NPFFR1Q9GZQ6 430 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 LINC00527Q9UJ94 153 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 LGALS9BQ3B8N2 356 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 LGALS9CQ6DKI2 356 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 C2orf82Q6UX34 121 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 LYPD2Q6UXB3 125 aa12.84□□□□□ -0.35
COL17A1-202ENST00000369733 DUSP14O95147 198 aaKnown RBP12.84□□□□□ -0.35
COL17A1-202ENST00000369733 ANAPC1Q9H1A4 1944 aa12.83□□□□□ -0.35
COL17A1-202ENST00000369733 VCYO14598 125 aa12.83□□□□□ -0.35
COL17A1-202ENST00000369733 THBDP07204 575 aa12.83□□□□□ -0.35
COL17A1-202ENST00000369733 ZNF672Q499Z4 452 aaPredicted RBP12.83□□□□□ -0.35
COL17A1-202ENST00000369733 TRGV11A0A075B6L2 103 aa12.83□□□□□ -0.36
COL17A1-202ENST00000369733 A0A1W2PPM0 123 aa12.83□□□□□ -0.36
COL17A1-202ENST00000369733 NDPQ00604 133 aa12.83□□□□□ -0.36
COL17A1-202ENST00000369733 C15orf65H3BRN8 121 aa12.83□□□□□ -0.36
COL17A1-202ENST00000369733 MRPL51Q4U2R6 128 aaKnown RBP12.83□□□□□ -0.36
COL17A1-202ENST00000369733 SSC4DQ8WTU2 575 aa12.83□□□□□ -0.36
COL17A1-202ENST00000369733 TRAV41A0A0B4J266 112 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 Q6ZR03 302 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 C9orf139Q6ZV77 190 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 ZNF318Q5VUA4 2279 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 TRBV19A0A075B6N1 114 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 CCL25O15444 150 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 VMO1Q7Z5L0 202 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 CDKN1BP46527 198 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 PRR20EP86478 221 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 PRR20CP86479 221 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 PRR20DP86480 221 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 PRR20BP86481 221 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 PRR20AP86496 221 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 C17orf58Q2M2W7 97 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 C7orf69Q9H7B7 122 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 C1orf122Q6ZSJ8 110 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 TDRG1Q3Y452 100 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 SIGLEC8Q9NYZ4 499 aa12.82□□□□□ -0.36
COL17A1-202ENST00000369733 C9JAW5 83 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 F8W1H4 67 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 ETDBQ3ZM63 59 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 LINC00477Q96M19 166 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 SRRM4A7MD48 611 aaKnown RBP12.81□□□□□ -0.36
COL17A1-202ENST00000369733 CD59P13987 128 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 ZNF833PQ6ZTB9 187 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 ZNF134P52741 427 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 ZNF876PQ49A33 203 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 Q8NFD4 153 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 FXYD5Q96DB9 178 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 SRSF8Q9BRL6 282 aaKnown RBP12.81□□□□□ -0.36
COL17A1-202ENST00000369733 APC2O95996 2303 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 Q8N8P6 123 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 FAM168AQ92567 244 aa12.81□□□□□ -0.36
COL17A1-202ENST00000369733 KLF5Q13887 457 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms