RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 GLMPQ8WWB7 406 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 OR4F4Q96R69 305 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 RHPN1-AS1Q9BWJ2 59 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 ZNF586Q9NXT0 402 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 A0A1W2PS18 150 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 H3BTX0 84 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 CHEK1O14757 476 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 RXFP4Q8TDU9 374 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 BLNKQ8WV28 456 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 YTHDF2Q9Y5A9 579 aaKnown RBP15.12■□□□□ 0.01
CLN3-205ENST00000359984 C2orf70A6NJV1 201 aa15.11■□□□□ 0.01
CLN3-205ENST00000359984 SOHLH1Q5JUK2 328 aa15.11■□□□□ 0.01
CLN3-205ENST00000359984 C17orf77Q96MU5 243 aa15.11■□□□□ 0.01
CLN3-205ENST00000359984 GPR82Q96P67 336 aa15.11■□□□□ 0.01
CLN3-205ENST00000359984 LOC105371267A0A1B0GV96 52 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 MYCNOSP40205 109 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 OR9G4Q8NGQ1 327 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 GRAMD2BQ96HH9 432 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 VAX2Q9UIW0 290 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 CBLN1P23435 193 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 CST9LP1Q5W188 147 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 ADAMTSL5Q6ZMM2 481 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 PEMTQ9UBM1 199 aa15.1■□□□□ 0.01
CLN3-205ENST00000359984 TRBV19A0A075B6N1 114 aa15.09■□□□□ 0.01
CLN3-205ENST00000359984 FOLR2P14207 255 aa15.09■□□□□ 0.01
CLN3-205ENST00000359984 GALR1P47211 349 aa15.09■□□□□ 0.01
CLN3-205ENST00000359984 ATP5G3P48201 142 aa15.08■□□□□ 0.01
CLN3-205ENST00000359984 CYB561D1Q8N8Q1 229 aa15.08■□□□□ 0.01
CLN3-205ENST00000359984 ELOVL1Q9BW60 279 aa15.08■□□□□ 0.01
CLN3-205ENST00000359984 SELENOKQ9Y6D0 94 aa15.08■□□□□ 0.01
CLN3-205ENST00000359984 ARL2-SNX15V9GYD0 113 aa15.08■□□□□ 0.01
CLN3-205ENST00000359984 A0A1W2PRE2 83 aa15.08■□□□□ 0
CLN3-205ENST00000359984 C7orf77A4D0Y5 90 aa15.08■□□□□ 0
CLN3-205ENST00000359984 ZNF785A8K8V0 405 aa15.08■□□□□ 0
CLN3-205ENST00000359984 NDUFB4O95168 129 aa15.08■□□□□ 0
CLN3-205ENST00000359984 ATF4P18848 351 aaPredicted RBP15.08■□□□□ 0
CLN3-205ENST00000359984 TAGLN2P37802 199 aaKnown RBP15.08■□□□□ 0
CLN3-205ENST00000359984 RANP62826 216 aaKnown RBP15.08■□□□□ 0
CLN3-205ENST00000359984 MEF2BQ02080 365 aaPredicted RBP15.08■□□□□ 0
CLN3-205ENST00000359984 SIGLEC15Q6ZMC9 328 aa15.08■□□□□ 0
CLN3-205ENST00000359984 C11orf94C9JXX5 98 aa15.07■□□□□ 0
CLN3-205ENST00000359984 CSN3P07498 182 aa15.07■□□□□ 0
CLN3-205ENST00000359984 BMI1P35226 326 aa15.07■□□□□ 0
CLN3-205ENST00000359984 CD81P60033 236 aa15.07■□□□□ 0
CLN3-205ENST00000359984 TMEM158Q8WZ71 300 aa15.07■□□□□ 0
CLN3-205ENST00000359984 A0A087X0K7 114 aa15.06■□□□□ 0
CLN3-205ENST00000359984 GGTLC3B5MD39 225 aa15.06■□□□□ 0
CLN3-205ENST00000359984 SLC17A3O00476 420 aa15.06■□□□□ 0
CLN3-205ENST00000359984 OVOL1O14753 267 aa15.06■□□□□ 0
CLN3-205ENST00000359984 FAM90A2PQ658T7 463 aa15.06■□□□□ 0
CLN3-205ENST00000359984 SUMO1P63165 101 aaKnown RBP15.06■□□□□ 0
CLN3-205ENST00000359984 RHEBQ15382 184 aa15.06■□□□□ 0
CLN3-205ENST00000359984 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.06■□□□□ 0
CLN3-205ENST00000359984 SMCO4Q9NRQ5 59 aa15.06■□□□□ 0
CLN3-205ENST00000359984 MLXQ9UH92 298 aa15.06■□□□□ 0
CLN3-205ENST00000359984 NDUFS6O75380 124 aaKnown RBP15.05■□□□□ -0
CLN3-205ENST00000359984 TCF24Q7RTU0 167 aa15.05■□□□□ -0
CLN3-205ENST00000359984 ZNF747Q9BV97 191 aa15.05■□□□□ -0
CLN3-205ENST00000359984 RPS10P5Q9NQ39 176 aa15.05■□□□□ -0
CLN3-205ENST00000359984 WNK1Q9H4A3 2382 aa15.04■□□□□ -0
CLN3-205ENST00000359984 HELTA6NFD8 242 aa15.04■□□□□ -0
CLN3-205ENST00000359984 M0QZ24 198 aa15.04■□□□□ -0
CLN3-205ENST00000359984 M0R036 132 aa15.04■□□□□ -0
CLN3-205ENST00000359984 PDE6HQ13956 83 aa15.04■□□□□ -0
CLN3-205ENST00000359984 TXNDC17Q9BRA2 123 aa15.04■□□□□ -0
CLN3-205ENST00000359984 Q9H3A6 140 aa15.04■□□□□ -0
CLN3-205ENST00000359984 TUBA4BQ9H853 241 aa15.04■□□□□ -0
CLN3-205ENST00000359984 ZMAT5Q9UDW3 170 aaKnown RBP15.04■□□□□ -0
CLN3-205ENST00000359984 PGPA6NDG6 321 aa15.03■□□□□ -0
CLN3-205ENST00000359984 COLCA2A8K830 154 aa15.03■□□□□ -0
CLN3-205ENST00000359984 AKR1C3P42330 323 aa15.03■□□□□ -0
CLN3-205ENST00000359984 RPL11P62913 178 aaKnown RBP15.03■□□□□ -0
CLN3-205ENST00000359984 EXOC3-AS1Q8N2X6 119 aa15.03■□□□□ -0
CLN3-205ENST00000359984 ZNF253O75346 499 aa15.03■□□□□ -0
CLN3-205ENST00000359984 PF4P02776 101 aa15.03■□□□□ -0
CLN3-205ENST00000359984 OTORQ9NRC9 128 aa15.03■□□□□ -0
CLN3-205ENST00000359984 LYPD1Q8N2G4 141 aa15.02■□□□□ -0
CLN3-205ENST00000359984 IGKV3-7A0A075B6H7 116 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 MEOX2P50222 304 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 C12orf54Q6X4T0 127 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 C3orf56Q8N813 242 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 LINC00482Q8N8I6 264 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 ZNF331Q9NQX6 463 aaPredicted RBP15.01□□□□□ -0.01
CLN3-205ENST00000359984 PDE6DO43924 150 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 CEBPGP53567 150 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 PSG9Q00887 426 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 IGFL4Q6B9Z1 124 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 NRN1Q9NPD7 142 aa15.01□□□□□ -0.01
CLN3-205ENST00000359984 C15orf54Q8N8G6 183 aa15□□□□□ -0.01
CLN3-205ENST00000359984 TVP23CQ96ET8 276 aa15□□□□□ -0.01
CLN3-205ENST00000359984 NIPSNAP3BQ9BS92 247 aa15□□□□□ -0.01
CLN3-205ENST00000359984 SIGLEC8Q9NYZ4 499 aa15□□□□□ -0.01
CLN3-205ENST00000359984 TRAV8-2A0A0B4J237 113 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 SCO2A0A1W2PP80 73 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 F6UZH7 168 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 SLC25A5P05141 298 aaKnown RBP14.99□□□□□ -0.01
CLN3-205ENST00000359984 DEFB114Q30KQ6 69 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 LURAP1LQ8IV03 231 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 GBGT1Q8N5D6 347 aa14.99□□□□□ -0.01
CLN3-205ENST00000359984 DYNLRB2Q8TF09 96 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms