RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZNF48Q96MX3 618 aaPredicted RBP17.09■□□□□ 0.33
SHMT1-202ENST00000352886 TRBV6-1A0A0K0K1D8 114 aa17.09■□□□□ 0.33
SHMT1-202ENST00000352886 HSBP1O75506 76 aa17.09■□□□□ 0.33
SHMT1-202ENST00000352886 NPSP0C0P6 89 aa17.09■□□□□ 0.33
SHMT1-202ENST00000352886 C3orf79P0CE67 100 aa17.09■□□□□ 0.33
SHMT1-202ENST00000352886 ZNF705AQ6ZN79 300 aaPredicted RBP17.08■□□□□ 0.33
SHMT1-202ENST00000352886 BORCS7Q96B45 105 aa17.08■□□□□ 0.33
SHMT1-202ENST00000352886 ZC2HC1AQ96GY0 325 aa17.08■□□□□ 0.33
SHMT1-202ENST00000352886 THYN1Q9P016 225 aa17.08■□□□□ 0.33
SHMT1-202ENST00000352886 FAM231BA6NCW3 169 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 ZNF785A8K8V0 405 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 K7EQM0 130 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 M0R3E3 92 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 NDUFB8O95169 186 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 OR4B1Q8NGF8 309 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 TMEM190Q8WZ59 177 aa17.08■□□□□ 0.32
SHMT1-202ENST00000352886 RNASEKQ6P5S7 137 aaKnown RBP17.07■□□□□ 0.32
SHMT1-202ENST00000352886 S100A7AQ86SG5 101 aa17.07■□□□□ 0.32
SHMT1-202ENST00000352886 PSG8Q9UQ74 426 aa17.07■□□□□ 0.32
SHMT1-202ENST00000352886 NCOR2Q9Y618 2525 aa17.07■□□□□ 0.32
SHMT1-202ENST00000352886 PSG3Q16557 428 aa17.07■□□□□ 0.32
SHMT1-202ENST00000352886 MIEN1Q9BRT3 115 aa17.07■□□□□ 0.32
SHMT1-202ENST00000352886 ZFP30Q9Y2G7 519 aa17.07■□□□□ 0.32
SHMT1-202ENST00000352886 CHD8Q9HCK8 2581 aa17.06■□□□□ 0.32
SHMT1-202ENST00000352886 IGHV7-81A0A0B4J1V7 117 aa17.06■□□□□ 0.32
SHMT1-202ENST00000352886 OR2T8A6NH00 312 aa17.06■□□□□ 0.32
SHMT1-202ENST00000352886 EGR2P11161 476 aaPredicted RBP17.06■□□□□ 0.32
SHMT1-202ENST00000352886 FOXA3P55318 350 aaPredicted RBP17.06■□□□□ 0.32
SHMT1-202ENST00000352886 C16orf54Q6UWD8 224 aa17.06■□□□□ 0.32
SHMT1-202ENST00000352886 IGHV2-70DA0A0C4DH43 119 aa17.05■□□□□ 0.32
SHMT1-202ENST00000352886 GAGE1Q13065 139 aa17.05■□□□□ 0.32
SHMT1-202ENST00000352886 ANKRD39Q53RE8 183 aa17.05■□□□□ 0.32
SHMT1-202ENST00000352886 Q8N9W7 124 aa17.05■□□□□ 0.32
SHMT1-202ENST00000352886 M0R2Z0 102 aa17.05■□□□□ 0.32
SHMT1-202ENST00000352886 EFNA4P52798 201 aa17.05■□□□□ 0.32
SHMT1-202ENST00000352886 RPLP1P05386 114 aaKnown RBP17.04■□□□□ 0.32
SHMT1-202ENST00000352886 FAM106CPP0CH98 169 aa17.04■□□□□ 0.32
SHMT1-202ENST00000352886 PDE6HQ13956 83 aa17.04■□□□□ 0.32
SHMT1-202ENST00000352886 FAM120AOSQ5T036 256 aa17.04■□□□□ 0.32
SHMT1-202ENST00000352886 AAMDCQ9H7C9 122 aa17.04■□□□□ 0.32
SHMT1-202ENST00000352886 CHEK1O14757 476 aa17.04■□□□□ 0.32
SHMT1-202ENST00000352886 APOHP02749 345 aaPredicted RBP17.03■□□□□ 0.32
SHMT1-202ENST00000352886 URB1-AS1Q96HZ7 61 aa17.03■□□□□ 0.32
SHMT1-202ENST00000352886 AKAP6Q13023 2319 aa17.03■□□□□ 0.32
SHMT1-202ENST00000352886 FAM181BA6NEQ2 426 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 UBE2E1P51965 193 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 M0QZK8 103 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 HAX1O00165 279 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 CTSGP08311 255 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 LINC00614P0C842 121 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 ARL6IP6Q8N6S5 226 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 BPESC1Q9GZL8 116 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 C1RLQ9NZP8 487 aa17.02■□□□□ 0.32
SHMT1-202ENST00000352886 M0QZ24 198 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 CRIP1P50238 77 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 AJUBAQ96IF1 538 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 SH2D7A6NKC9 451 aaPredicted RBP17.01■□□□□ 0.31
SHMT1-202ENST00000352886 OVOL3O00110 214 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 CTRLP40313 264 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 UQCRFS1P47985 274 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 SPATA45Q537H7 98 aa17.01■□□□□ 0.31
SHMT1-202ENST00000352886 ITLN2Q8WWU7 325 aaPredicted RBP17.01■□□□□ 0.31
SHMT1-202ENST00000352886 LOC102724200A0A096LPH7 203 aaPredicted RBP17■□□□□ 0.31
SHMT1-202ENST00000352886 SAA4P35542 130 aa17■□□□□ 0.31
SHMT1-202ENST00000352886 C8orf49Q96NF6 230 aa17■□□□□ 0.31
SHMT1-202ENST00000352886 TMUB1Q9BVT8 246 aa17■□□□□ 0.31
SHMT1-202ENST00000352886 SCGB2A1O75556 95 aa17■□□□□ 0.31
SHMT1-202ENST00000352886 LCN12Q6JVE5 192 aa17■□□□□ 0.31
SHMT1-202ENST00000352886 EBLN2Q6P2I7 272 aa17■□□□□ 0.31
SHMT1-202ENST00000352886 RPL7P18124 248 aaKnown RBP16.99■□□□□ 0.31
SHMT1-202ENST00000352886 A0A1B0GUT8 65 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 C19orf84I3L1E1 186 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 ARMS2P0C7Q2 107 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 CSN1S1P47710 185 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 LMO4P61968 165 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 PSG9Q00887 426 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 ECSCRQ19T08 205 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 RABAC1Q9UI14 185 aa16.99■□□□□ 0.31
SHMT1-202ENST00000352886 IGHV3OR16-8A0A075B7F1 116 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 IGHV3-35A0A0C4DH35 117 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 PMCHL1Q16048 86 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 FAM162BQ5T6X4 162 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 ATOH7Q8N100 152 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 NDFIP1Q9BT67 221 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 CT45A10P0DMU9 189 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 UNQ5815/PRO19632Q6UWF5 114 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 TXN2Q99757 166 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 PRORYQ9H606 182 aa16.98■□□□□ 0.31
SHMT1-202ENST00000352886 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.97■□□□□ 0.31
SHMT1-202ENST00000352886 ITPR1Q14643 2758 aa16.97■□□□□ 0.31
SHMT1-202ENST00000352886 C2orf70A6NJV1 201 aa16.97■□□□□ 0.31
SHMT1-202ENST00000352886 ATP6V0E1O15342 81 aa16.97■□□□□ 0.31
SHMT1-202ENST00000352886 C15orf32Q32M92 178 aa16.97■□□□□ 0.31
SHMT1-202ENST00000352886 FAM110DQ8TAY7 271 aaPredicted RBP16.97■□□□□ 0.31
SHMT1-202ENST00000352886 CLEC5AQ9NY25 188 aa16.97■□□□□ 0.31
SHMT1-202ENST00000352886 IGKV2-40A0A087WW87 121 aaPredicted RBP16.96■□□□□ 0.31
SHMT1-202ENST00000352886 IGKV2D-40P01614 121 aaPredicted RBP16.96■□□□□ 0.31
SHMT1-202ENST00000352886 GPR183P32249 361 aa16.96■□□□□ 0.31
SHMT1-202ENST00000352886 MRPL52Q86TS9 123 aaKnown RBP16.96■□□□□ 0.31
SHMT1-202ENST00000352886 TPPP3Q9BW30 176 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms