RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 PSG3Q16557 428 aa17.33■□□□□ 0.37
SHMT1-201ENST00000316694 PMCHL2Q9BQD1 86 aa17.33■□□□□ 0.37
SHMT1-201ENST00000316694 HSBP1L1C9JCN9 74 aa17.33■□□□□ 0.36
SHMT1-201ENST00000316694 RNF5Q99942 180 aa17.33■□□□□ 0.36
SHMT1-201ENST00000316694 RNF24Q9Y225 148 aa17.33■□□□□ 0.36
SHMT1-201ENST00000316694 TRBV6-1A0A0K0K1D8 114 aa17.32■□□□□ 0.36
SHMT1-201ENST00000316694 BCL6BQ8N143 479 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-201ENST00000316694 CRIP1P50238 77 aa17.32■□□□□ 0.36
SHMT1-201ENST00000316694 MPV17L2Q567V2 206 aa17.32■□□□□ 0.36
SHMT1-201ENST00000316694 PPP1R14DQ9NXH3 145 aa17.32■□□□□ 0.36
SHMT1-201ENST00000316694 SPTA1P02549 2419 aa17.32■□□□□ 0.36
SHMT1-201ENST00000316694 ANKHD1Q8IWZ3 2542 aaKnown RBP17.32■□□□□ 0.36
SHMT1-201ENST00000316694 NBR2O15453 112 aa17.31■□□□□ 0.36
SHMT1-201ENST00000316694 LY6HO94772 140 aa17.31■□□□□ 0.36
SHMT1-201ENST00000316694 ARF6P62330 175 aa17.31■□□□□ 0.36
SHMT1-201ENST00000316694 ZNF414Q96IQ9 312 aa17.31■□□□□ 0.36
SHMT1-201ENST00000316694 SRSF8Q9BRL6 282 aaKnown RBP17.31■□□□□ 0.36
SHMT1-201ENST00000316694 HSPB8Q9UJY1 196 aa17.31■□□□□ 0.36
SHMT1-201ENST00000316694 C8orf49Q96NF6 230 aa17.31■□□□□ 0.36
SHMT1-201ENST00000316694 NBASA2RRP1 2371 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 GNG7O60262 68 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 HES1Q14469 280 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 ZNF672Q499Z4 452 aaPredicted RBP17.3■□□□□ 0.36
SHMT1-201ENST00000316694 SLC25A34Q6PIV7 304 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 NEU4Q8WWR8 484 aaPredicted RBP17.3■□□□□ 0.36
SHMT1-201ENST00000316694 AP5S1Q9NUS5 200 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 A0A1W2PRD5 423 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 A0A1W2PRF3 423 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 A0A1W2PRM7 423 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 PET117Q6UWS5 81 aa17.3■□□□□ 0.36
SHMT1-201ENST00000316694 GRNP28799 593 aaKnown RBP17.29■□□□□ 0.36
SHMT1-201ENST00000316694 LYPD1Q8N2G4 141 aa17.29■□□□□ 0.36
SHMT1-201ENST00000316694 TMSB15BA0A087X1C1 80 aa17.29■□□□□ 0.36
SHMT1-201ENST00000316694 FAM90A27PA6NNH2 459 aa17.29■□□□□ 0.36
SHMT1-201ENST00000316694 KLRD1Q13241 179 aa17.29■□□□□ 0.36
SHMT1-201ENST00000316694 DPM3Q9P2X0 92 aa17.29■□□□□ 0.36
SHMT1-201ENST00000316694 MRPS12O15235 138 aaKnown RBP17.28■□□□□ 0.36
SHMT1-201ENST00000316694 NUDT3O95989 172 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 CT45A10P0DMU9 189 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 UBE2V1Q13404 147 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 PRSS3P2Q8NHM4 247 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 FBLN7Q53RD9 439 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 FA2HQ7L5A8 372 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 AAMDCQ9H7C9 122 aa17.28■□□□□ 0.36
SHMT1-201ENST00000316694 ERASQ7Z444 233 aa17.27■□□□□ 0.36
SHMT1-201ENST00000316694 SERTM2A0A1B0GWG4 89 aa17.27■□□□□ 0.35
SHMT1-201ENST00000316694 WI2-2373I1.2A0A1W2PRP0 233 aa17.27■□□□□ 0.35
SHMT1-201ENST00000316694 VKORC1Q9BQB6 163 aa17.27■□□□□ 0.35
SHMT1-201ENST00000316694 K7ENP7 123 aa17.26■□□□□ 0.35
SHMT1-201ENST00000316694 SCRT2Q9NQ03 307 aa17.26■□□□□ 0.35
SHMT1-201ENST00000316694 SFTPCP11686 197 aa17.26■□□□□ 0.35
SHMT1-201ENST00000316694 CFHR4Q92496 578 aa17.26■□□□□ 0.35
SHMT1-201ENST00000316694 CBY1Q9Y3M2 126 aa17.26■□□□□ 0.35
SHMT1-201ENST00000316694 RAB1BQ9H0U4 201 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 MUC21A0A0G2JKD1 596 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 MUC21A0A140T8X8 626 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 LOC389332A0A1B0GUA5 103 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 A0A1B0GW15 77 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 IGHV3-23P01764 117 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 MUC21Q5SSG8 566 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 Q6AWC8 147 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 LY6G5BQ8NDX9 201 aa17.25■□□□□ 0.35
SHMT1-201ENST00000316694 FAM106CPP0CH98 169 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 FAM106AQ4KMX7 169 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 LINC01545Q5VT33 79 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 LYZL1Q6UWQ5 148 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 TMEM213A2RRL7 107 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 CEACAM3P40198 252 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 IFI27P40305 119 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-201ENST00000316694 CSN1S1P47710 185 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 MFAP4P55083 255 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 RELQ04864 619 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-201ENST00000316694 OR10AG1Q8NH19 301 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 TMEM190Q8WZ59 177 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 FANCD2OSQ96PS1 177 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 ZNF747Q9BV97 191 aa17.24■□□□□ 0.35
SHMT1-201ENST00000316694 TMEM189A5PLL7 270 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 D6R8Y8 96 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 VAMP3Q15836 100 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 C5orf64Q2M2E5 130 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 BVES-AS1Q5T3Y7 98 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 GATD1Q8NB37 220 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 NPBQ8NG41 125 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 OR11H6Q8NGC7 330 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 TRAV30A0A087WSZ9 112 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 IGKV2-40A0A087WW87 121 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-201ENST00000316694 NDUFA3O95167 84 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 NCR2O95944 276 aa17.23■□□□□ 0.35
SHMT1-201ENST00000316694 IGKV2D-40P01614 121 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-201ENST00000316694 SVEP1Q4LDE5 3571 aa17.22■□□□□ 0.35
SHMT1-201ENST00000316694 NCBP2LA6PVI3 153 aaKnown RBP17.22■□□□□ 0.35
SHMT1-201ENST00000316694 IGLV11-55A0A075B6I3 123 aa17.22■□□□□ 0.35
SHMT1-201ENST00000316694 SH2D1AO60880 128 aa17.22■□□□□ 0.35
SHMT1-201ENST00000316694 PDE6HQ13956 83 aa17.22■□□□□ 0.35
SHMT1-201ENST00000316694 S100A7AQ86SG5 101 aa17.22■□□□□ 0.35
SHMT1-201ENST00000316694 A0A087X0K7 114 aa17.21■□□□□ 0.35
SHMT1-201ENST00000316694 LOXL1Q08397 574 aaPredicted RBP17.21■□□□□ 0.35
SHMT1-201ENST00000316694 AMN1Q8IY45 258 aa17.21■□□□□ 0.35
SHMT1-201ENST00000316694 MS4A6AQ9H2W1 248 aa17.21■□□□□ 0.35
SHMT1-201ENST00000316694 OR8A1Q8NGG7 326 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms