RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 WDR86Q86TI4 376 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 CHCHD5Q9BSY4 110 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 DPH3P1Q9H4G8 78 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 TRAV12-3A0A0B4J271 114 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 ERVK11-1P61568 191 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 PDE6HQ13956 83 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 DMRTA1Q5VZB9 504 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 MS4A6AQ9H2W1 248 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 DTX2Q86UW9 622 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.88□□□□□ -0.353e-15■■■■■ 56.9
USP42-201ENST00000306177 ADARB2-AS1A8MUL3 147 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 GATA3P23771 443 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 FAM90A2PQ658T7 463 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 ZNF833PQ6ZTB9 187 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 ZNF415Q09FC8 603 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 IGFL4Q6B9Z1 124 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 DAZ1Q9NQZ3 744 aaKnown RBP12.88□□□□□ -0.35
USP42-201ENST00000306177 IGLV1-44P01699 117 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 MSMBP08118 114 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 Q86TA4 180 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 TSPAN13O95857 204 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 PLNP26678 52 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 PRADC1Q9BSG0 188 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 NDUFA4L2Q9NRX3 87 aa12.88□□□□□ -0.35
USP42-201ENST00000306177 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.87□□□□□ -0.35
USP42-201ENST00000306177 ZNF124Q15973 351 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 RSPO1Q2MKA7 263 aaPredicted RBP12.87□□□□□ -0.35
USP42-201ENST00000306177 NBL1P41271 181 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 C10orf126Q8N4M7 172 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 KLHL30-AS1Q8NEE0 82 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 FAM110DQ8TAY7 271 aaPredicted RBP12.87□□□□□ -0.35
USP42-201ENST00000306177 ORAOV1Q8WV07 137 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 MUC6Q6W4X9 2439 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 CD300EQ496F6 205 aaPredicted RBP12.87□□□□□ -0.35
USP42-201ENST00000306177 C17orf58Q2M2W7 97 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 ZNF876PQ49A33 203 aa12.87□□□□□ -0.35
USP42-201ENST00000306177 TRAV2A0A0B4J234 112 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 CRPP02741 224 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 LCNL1Q6ZST4 164 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 SSC4DQ8WTU2 575 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 PLXND1Q9Y4D7 1925 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 OVOL3O00110 214 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 PRR31Q5SQ13 230 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 TEX36Q5VZQ5 186 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 RUSC1-AS1Q66K80 236 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 FAM215AQ9Y5M1 114 aa12.86□□□□□ -0.35
USP42-201ENST00000306177 A6NNC1 897 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 HOXA3O43365 443 aaPredicted RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 ATP6V0E1O15342 81 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 LOXP28300 417 aaPredicted RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 RPL36AP83881 106 aaKnown RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 HSD52Q0P140 79 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 RPL36ALQ969Q0 106 aaKnown RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 ADCYAP1P18509 176 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 MRPL27Q9P0M9 148 aaKnown RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 MED13LQ71F56 2210 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 TRGV1A0A0A0MS02 117 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 NDUFB8O95169 186 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 YPEL3P61236 119 aaPredicted RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 MST1LQ2TV78 715 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 TMEM249Q2WGJ8 235 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 SP5Q6BEB4 398 aaPredicted RBP12.85□□□□□ -0.35
USP42-201ENST00000306177 TMEM256Q8N2U0 113 aa12.85□□□□□ -0.35
USP42-201ENST00000306177 IGHV3-73A0A0B4J1V6 119 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 VCYO14598 125 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 LINC00311Q8N616 119 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 GFRA4Q9GZZ7 299 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 IGLV3-9A0A075B6K5 115 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 DUX4L9Q6RFH8 374 aaPredicted RBP12.84□□□□□ -0.35
USP42-201ENST00000306177 OR9G4Q8NGQ1 327 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 GHRHP01286 108 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 INSP01308 110 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 PAX9P55771 341 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 CFHR2P36980 270 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 LIME1Q9H400 295 aa12.84□□□□□ -0.35
USP42-201ENST00000306177 IGHV1-69DA0A0B4J2H0 117 aa12.83□□□□□ -0.35
USP42-201ENST00000306177 IGHV1-69P01742 117 aa12.83□□□□□ -0.35
USP42-201ENST00000306177 SEC11AP67812 179 aa12.83□□□□□ -0.35
USP42-201ENST00000306177 C14orf178Q8N769 122 aaPredicted RBP12.83□□□□□ -0.35
USP42-201ENST00000306177 IGHV2-70DA0A0C4DH43 119 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 RNF223E7ERA6 249 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 IGLV3-1P01715 115 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 C1QTNF4Q9BXJ3 329 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 NOTCH3Q9UM47 2321 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 FXYD7P58549 80 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 RNF166Q96A37 237 aaPredicted RBP12.83□□□□□ -0.36
USP42-201ENST00000306177 LINC00479Q96M42 142 aa12.83□□□□□ -0.36
USP42-201ENST00000306177 MORN3Q6PF18 240 aaPredicted RBP12.83□□□□□ -0.36
USP42-201ENST00000306177 SPAG8Q99932 426 aaPredicted RBP12.83□□□□□ -0.36
USP42-201ENST00000306177 IGKV1-39P01597 117 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 IGKV1D-39P04432 117 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 PAX2Q02962 417 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 SFTA2Q6UW10 78 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 IGHV3-64A0A075B6Q5 118 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 C15orf65H3BRN8 121 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 SYNJ2BPP57105 145 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 FNDC4Q9H6D8 234 aaPredicted RBP12.82□□□□□ -0.36
USP42-201ENST00000306177 TMEM75Q8N9X5 138 aa12.82□□□□□ -0.36
USP42-201ENST00000306177 SLC25A20O43772 301 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms