RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PLA2G5P39877 138 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 CDKN1BP46527 198 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 BVES-AS1Q5T3Y7 98 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 PRSS57Q6UWY2 283 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 ZNF329Q86UD4 541 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 FAM168AQ92567 244 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 APOBEC3AP31941 199 aaPredicted RBP12.45□□□□□ -0.42
SHH-201ENST00000297261 FAM71F2Q6NXP2 309 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 LCNL1Q6ZST4 164 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 FAM215AQ9Y5M1 114 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 MMP23AO75900 390 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 PPBPP02775 128 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 VDAC2P45880 294 aaPredicted RBP12.45□□□□□ -0.42
SHH-201ENST00000297261 ADIPOQQ15848 244 aa12.45□□□□□ -0.42
SHH-201ENST00000297261 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.44□□□□□ -0.42
SHH-201ENST00000297261 ZNF815PA8K554 130 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 IGHV1-46P01743 117 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 SZT2Q5T011 3432 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 IGKV1D-17A0A075B6S4 117 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 IGKV2-40A0A087WW87 121 aaPredicted RBP12.44□□□□□ -0.42
SHH-201ENST00000297261 IGHV1-24A0A0C4DH33 117 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 B9A039 149 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 IGKV2D-40P01614 121 aaPredicted RBP12.44□□□□□ -0.42
SHH-201ENST00000297261 FRMD6-AS1P0C7T7 363 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 LMO1P25800 156 aa12.44□□□□□ -0.42
SHH-201ENST00000297261 SLC25A39Q9BZJ4 359 aaPredicted RBP12.44□□□□□ -0.42
SHH-201ENST00000297261 IGKV3-20P01619 116 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 CFHR2P36980 270 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 CD300EQ496F6 205 aaPredicted RBP12.43□□□□□ -0.42
SHH-201ENST00000297261 Q8TAT8 98 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 DEFB104AQ8WTQ1 72 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 IGLC7A0M8Q6 106 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 CEACAM4O75871 244 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 EBLN2Q6P2I7 272 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 C11orf52Q96A22 123 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 PF4V1P10720 104 aa12.43□□□□□ -0.42
SHH-201ENST00000297261 FAM106CPP0CH98 169 aa12.42□□□□□ -0.42
SHH-201ENST00000297261 ZNF56Q15929 161 aa12.42□□□□□ -0.42
SHH-201ENST00000297261 WDR86Q86TI4 376 aa12.42□□□□□ -0.42
SHH-201ENST00000297261 DPM3Q9P2X0 92 aa12.42□□□□□ -0.42
SHH-201ENST00000297261 TSSC4Q9Y5U2 329 aaPredicted RBP12.42□□□□□ -0.42
SHH-201ENST00000297261 WNK1Q9H4A3 2382 aa12.42□□□□□ -0.42
SHH-201ENST00000297261 IGHV2-70DA0A0C4DH43 119 aa12.42□□□□□ -0.42
SHH-201ENST00000297261 CENPVQ7Z7K6 275 aaPredicted RBP12.42□□□□□ -0.42
SHH-201ENST00000297261 C9orf118A6NHY6 69 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 A8MWV9 139 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 KLF17Q5JT82 389 aaPredicted RBP12.41□□□□□ -0.42
SHH-201ENST00000297261 CHAC1Q9BUX1 264 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 TRIOO75962 3097 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 SMIM27A0A1W2PRY6 76 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 TOMM40O96008 361 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 RNASE6Q93091 150 aaKnown RBP12.41□□□□□ -0.42
SHH-201ENST00000297261 TSPAN13O95857 204 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 RAB9AP51151 201 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 C2CD3Q4AC94 2353 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 H3BRM9 83 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 SRSF1Q07955 248 aaKnown RBP eCLIP12.41□□□□□ -0.42
SHH-201ENST00000297261 KRTAP27-1Q3LI81 207 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 Q6ZR03 302 aa12.41□□□□□ -0.42
SHH-201ENST00000297261 PRTN3P24158 256 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 TMEM213A2RRL7 107 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 PIEZO2Q9H5I5 2752 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 DKK4Q9UBT3 224 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 SAP30O75446 220 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 COX8AP10176 69 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 FAM159AQ6UWV7 190 aa12.4□□□□□ -0.42
SHH-201ENST00000297261 FGF23Q9GZV9 251 aaPredicted RBP12.4□□□□□ -0.42
SHH-201ENST00000297261 IGFL4Q6B9Z1 124 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 PVRIGQ6DKI7 326 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 TMEM167AQ8TBQ9 72 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 TMEM158Q8WZ71 300 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 TMEM14BQ9NUH8 114 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 Q6ZSR3 168 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 IGHV4-39P01824 125 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 ZC2HC1AQ96GY0 325 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 TMEM133Q9H2Q1 129 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 CHTOPQ9Y3Y2 248 aaKnown RBP12.39□□□□□ -0.43
SHH-201ENST00000297261 SPINK8P0C7L1 97 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 ASIPP42127 132 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 Q86TA4 180 aa12.39□□□□□ -0.43
SHH-201ENST00000297261 C10orf126Q8N4M7 172 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 TRGV9Q99603 122 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 LYNX1G3V0Z9 82 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 LYNX1P0DP58 116 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 GAGE2BQ13066 116 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 GAGE2EQ4V326 116 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 PGPEP1Q9NXJ5 209 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 GAGE2DQ9UEU5 116 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 PTPRQQ9UMZ3 2332 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 IGLV1-44P01699 117 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 SCGB1A1P11684 91 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 ID1P41134 155 aa12.38□□□□□ -0.43
SHH-201ENST00000297261 TMEM238C9JI98 176 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 H0YJW9 148 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 LINC00173Q6ZV60 143 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 DEFB125Q8N687 156 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 FNDC10F2Z333 226 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 CLEC19AQ6UXS0 136 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 ARPC1AQ92747 370 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 SMPXQ9UHP9 88 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms