RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 C3orf79P0CE67 100 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 EBI3Q14213 229 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 CT83Q5H943 113 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 ZNF705AQ6ZN79 300 aaPredicted RBP14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 OOSP1A8MZH6 123 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 SAA4P35542 130 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 AJUBAQ96IF1 538 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 TMUB1Q9BVT8 246 aa14.36□□□□□ -0.11
SHKBP1-201ENST00000291842 NPIPB6E9PJ23 425 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 HSBP1O75506 76 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 FAM106CPP0CH98 169 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 ECSCRQ19T08 205 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 C8orf49Q96NF6 230 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 SNHG12Q9BXW3 62 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 THYN1Q9P016 225 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 RNF24Q9Y225 148 aa14.35□□□□□ -0.11
SHKBP1-201ENST00000291842 RNF224P0DH78 156 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 PSG3Q16557 428 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 TMEM75Q8N9X5 138 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 CTSGP08311 255 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 LMO4P61968 165 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 KLF5Q13887 457 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 IGFL4Q6B9Z1 124 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 BORCS7Q96B45 105 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 PRORYQ9H606 182 aa14.34□□□□□ -0.11
SHKBP1-201ENST00000291842 MAP1AP78559 2803 aaPredicted RBP14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 K7EQM0 130 aa14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 CRIP1P50238 77 aa14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 UBE2E1P51965 193 aa14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 PMCHL1Q16048 86 aa14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 C2orf88Q9BSF0 95 aa14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 GFRA4Q9GZZ7 299 aa14.33□□□□□ -0.11
SHKBP1-201ENST00000291842 M0R2Z0 102 aa14.33□□□□□ -0.12
SHKBP1-201ENST00000291842 SSTP61278 116 aa14.33□□□□□ -0.12
SHKBP1-201ENST00000291842 LCN12Q6JVE5 192 aa14.33□□□□□ -0.12
SHKBP1-201ENST00000291842 ATOH7Q8N100 152 aa14.33□□□□□ -0.12
SHKBP1-201ENST00000291842 LYPD1Q8N2G4 141 aa14.33□□□□□ -0.12
SHKBP1-201ENST00000291842 TPPP3Q9BW30 176 aa14.33□□□□□ -0.12
SHKBP1-201ENST00000291842 LINC01548A6NM66 108 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 UNQ5815/PRO19632Q6UWF5 114 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 URB1-AS1Q96HZ7 61 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 ZNF48Q96MX3 618 aaPredicted RBP14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 AAMDCQ9H7C9 122 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 IGHV3OR16-10A0A075B7F0 116 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 CHEK1O14757 476 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 ATP6V0E1O15342 81 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 PIP4P2Q8N4L2 257 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 C20orf144Q9BQM9 153 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 C1RLQ9NZP8 487 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 ZFP30Q9Y2G7 519 aa14.32□□□□□ -0.12
SHKBP1-201ENST00000291842 GPR183P32249 361 aa14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 C15orf32Q32M92 178 aa14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 IGKV2-40A0A087WW87 121 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 IGKV2D-40P01614 121 aaPredicted RBP14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 ARMS2P0C7Q2 107 aa14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 OR4B1Q8NGF8 309 aa14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 PKD1L2Q7Z442 2459 aa14.31□□□□□ -0.12
SHKBP1-201ENST00000291842 TRBV6-1A0A0K0K1D8 114 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 G3V318 75 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 OVOL3O00110 214 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 APOHP02749 345 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 C16orf54Q6UWD8 224 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 SOX21Q9Y651 276 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 TMSB15BA0A087X1C1 80 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 FAM181BA6NEQ2 426 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 HLA-DMBP28068 263 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 EBLN2Q6P2I7 272 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 MIEN1Q9BRT3 115 aa14.3□□□□□ -0.12
SHKBP1-201ENST00000291842 ZNF138P52744 262 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 MAJINQ3KP22 176 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 S100A7AQ86SG5 101 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 CLEC5AQ9NY25 188 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 RABAC1Q9UI14 185 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 SMAD5-AS1Q9Y6J3 95 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 FAM231BA6NCW3 169 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 SFTPCP11686 197 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 RHOGP84095 191 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 PDE6HQ13956 83 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 SPATA45Q537H7 98 aa14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 LBHQ53QV2 105 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-201ENST00000291842 LOC102724200A0A096LPH7 203 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 M0R143 59 aa14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 HAX1O00165 279 aa14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 CLEC3BP05452 202 aa14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 RPL7P18124 248 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 CSN1S1P47710 185 aa14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 TMEM219Q86XT9 240 aa14.28□□□□□ -0.12
SHKBP1-201ENST00000291842 IGHV3-66A0A0C4DH42 116 aa14.27□□□□□ -0.12
SHKBP1-201ENST00000291842 A0A1B0GUT8 65 aa14.27□□□□□ -0.12
SHKBP1-201ENST00000291842 NPFFO15130 113 aa14.27□□□□□ -0.12
SHKBP1-201ENST00000291842 IGHV4-39P01824 125 aa14.27□□□□□ -0.12
SHKBP1-201ENST00000291842 Q8TAT8 98 aa14.27□□□□□ -0.12
SHKBP1-201ENST00000291842 RAB4AP20338 218 aa14.27□□□□□ -0.13
SHKBP1-201ENST00000291842 CFAP46Q8IYW2 2715 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 IGHV3OR16-13A0A075B7E8 117 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 IGHV3-74A0A0B4J1X5 117 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 CENPVL3A0A0U1RRI6 287 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 CT45A10P0DMU9 189 aa14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 FAM110DQ8TAY7 271 aaPredicted RBP14.26□□□□□ -0.13
SHKBP1-201ENST00000291842 MUC21A0A0G2JKD1 596 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms