RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 GTSCR1Q86UQ5 136 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 BCL6BQ8N143 479 aaPredicted RBP8.72□□□□□ -1.01
CD44-201ENST00000263398 SHANK2-AS3Q9BTD1 123 aa8.72□□□□□ -1.01
CD44-201ENST00000263398 GATA4P43694 442 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 LY6DQ14210 128 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 GFRA4Q9GZZ7 299 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 DPH3P1Q9H4G8 78 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 FAM231BA6NCW3 169 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 TMEM8BA6NDV4 472 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 TMEM155Q4W5P6 130 aa8.71□□□□□ -1.01
CD44-201ENST00000263398 PTPRQQ9UMZ3 2332 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 A0A1W2PRX2 142 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 RBMY1BA6NDE4 496 aaKnown RBP8.71□□□□□ -1.02
CD44-201ENST00000263398 RBMY1EA6NEQ0 496 aaKnown RBP8.71□□□□□ -1.02
CD44-201ENST00000263398 IGLV3-1P01715 115 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 RBMY1DP0C7P1 496 aaKnown RBP8.71□□□□□ -1.02
CD44-201ENST00000263398 RBMY1A1P0DJD3 496 aaKnown RBP8.71□□□□□ -1.02
CD44-201ENST00000263398 RBMY1CP0DJD4 496 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 TDGF1P13385 188 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 IL15RAQ13261 267 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 Q6ZR03 302 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 LAMA2P24043 3122 aaKnown RBP8.71□□□□□ -1.02
CD44-201ENST00000263398 TICRRQ7Z2Z1 1910 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 LY6G6EA0A0G2JKS1 128 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 DSCR9P59020 149 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 U3KQA8 63 aa8.71□□□□□ -1.02
CD44-201ENST00000263398 IGKV3D-20A0A0C4DH25 116 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 COL8A2P25067 703 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 ZNF562Q6V9R5 426 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 AMN1Q8IY45 258 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 NDUFA4L2Q9NRX3 87 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 RANBP2P49792 3224 aaKnown RBP8.7□□□□□ -1.02
CD44-201ENST00000263398 A8MWV9 139 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 H3BUX3 64 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 GAGE13Q4V321 117 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 USMG5Q96IX5 58 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 C20orf144Q9BQM9 153 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 ZNF688P0C7X2 276 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 ZNF726P1Q15940 193 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 CT83Q5H943 113 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 ZC2HC1BQ5TFG8 222 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 CFAP161Q6P656 301 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 WDR86Q86TI4 376 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 ZNF492Q9P255 531 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 PLCE1Q9P212 2302 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 A0A087X0K7 114 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 WIPF3A6NGB9 483 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 A8MWP6 167 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 E7EQL1 145 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 CFHR2P36980 270 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 PAX2Q02962 417 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 WFDC12Q8WWY7 111 aa8.7□□□□□ -1.02
CD44-201ENST00000263398 FAM208BQ5VWN6 2430 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 B4DSR2 109 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 VCYO14598 125 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 Q8TCH9 128 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 ZGRF1Q86YA3 2104 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 TMEM238C9JI98 176 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 NDPQ00604 133 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 C3orf36Q3SXR2 165 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 ZNF876PQ49A33 203 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 C18orf32Q8TCD1 76 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 ZNRD1Q9P1U0 126 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 ERG28Q9UKR5 140 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 ACACBO00763 2458 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 FXYD7P58549 80 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 TMEM158Q8WZ71 300 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 SPG11Q96JI7 2443 aa8.69□□□□□ -1.02
CD44-201ENST00000263398 HTTP42858 3142 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 TRGV4A0A0C4DH28 118 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 ARMS2P0C7Q2 107 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 YPEL3P61236 119 aaPredicted RBP8.68□□□□□ -1.02
CD44-201ENST00000263398 IGFL4Q6B9Z1 124 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 SIGMAR1Q99720 223 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 DENND4CQ5VZ89 1909 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 LY6HO94772 140 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 IGHV2-5P01817 119 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 MORN3Q6PF18 240 aaPredicted RBP8.68□□□□□ -1.02
CD44-201ENST00000263398 BRD3OSQ6XYD6 125 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 CYYR1Q96J86 154 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 NAA38Q9BRA0 125 aaKnown RBP8.68□□□□□ -1.02
CD44-201ENST00000263398 ZNF503-AS2A6NEH8 195 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 IGHV4-39P01824 125 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 UBE2V1Q13404 147 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 C14orf178Q8N769 122 aaPredicted RBP8.68□□□□□ -1.02
CD44-201ENST00000263398 PLEKHB2Q96CS7 222 aa8.68□□□□□ -1.02
CD44-201ENST00000263398 NDUFS6O75380 124 aaKnown RBP8.67□□□□□ -1.02
CD44-201ENST00000263398 GHRHP01286 108 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 TMEM249Q2WGJ8 235 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 Q8NFD4 153 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.67□□□□□ -1.02
CD44-201ENST00000263398 FAM223BA6NKX1 122 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 FAM223AQ8IWN6 122 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 POLR3KQ9Y2Y1 108 aaPredicted RBP8.67□□□□□ -1.02
CD44-201ENST00000263398 A0A1B0GUS0 222 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 CD5LO43866 347 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 FCN3O75636 299 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 HTN3P15516 51 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 C17orf58Q2M2W7 97 aa8.67□□□□□ -1.02
CD44-201ENST00000263398 ZNF833PQ6ZTB9 187 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms