RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 MBD6Q96DN6 1003 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SMIM8Q96KF7 97 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 KCNS1Q96KK3 526 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SLC50A1Q9BRV3 221 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 PCGF1Q9BSM1 259 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 PRSS22Q9GZN4 317 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SEPSECSQ9HD40 501 aaKnown RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 IGHV1-69-2A0A0G2JMI3 117 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 J3QR06 171 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 ELLP55199 621 aaPredicted RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SSX9Q7RTT3 188 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 CLRN3Q8NCR9 226 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 ARPC1AQ92747 370 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM101Q96IK0 257 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 FAM19A4Q96LR4 140 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SPANXDQ9BXN6 97 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 MEGF9Q9H1U4 602 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 CACNG5Q9UF02 275 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 UBE2L5PA0A1B0GUS4 154 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 K7EN84 100 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 G6PCP35575 357 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 HLA-DRB5Q30154 266 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SLC16A13Q7RTY0 426 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 UBAC2Q8NBM4 344 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 VN1R17PQ8TDU5 208 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 MS4A10Q96PG2 267 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 ZNF702PQ9H963 129 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 NRN1Q9NPD7 142 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM140Q9NV12 185 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 ZNF580Q9UK33 172 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 URGCP-MRPS24S4R325 110 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 A8MWL6 223 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 SLC25A17O43808 307 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 PF4V1P10720 104 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 GPX4P36969 197 aaPredicted RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 CACNG7P62955 275 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 EWSR1Q01844 656 aaKnown RBP eCLIP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 MTURNQ8N3F0 131 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 CACNG8Q8WXS5 425 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 ZFP30Q9Y2G7 519 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TRAV8-2A0A0B4J237 113 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TEX48A0A1B0GUV7 120 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 RBMY1BA6NDE4 496 aaKnown RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 RBMY1EA6NEQ0 496 aaKnown RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 B4DSR2 109 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TMPRSS2O15393 492 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 HSBP1O75506 76 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 RBMY1DP0C7P1 496 aaKnown RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 ATP5J2P56134 94 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 LYZP61626 148 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TWIST1Q15672 202 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 ZNF705AQ6ZN79 300 aaPredicted RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 C5orf56Q8N8D9 126 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TMEM116Q8NCL8 245 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 DERL1Q9BUN8 251 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 NARFLQ9H6Q4 476 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TBL2Q9Y4P3 447 aaKnown RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 U3KQE9 123 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 FLGP20930 4061 aaPredicted RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 CBY3A6NI87 242 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 H3BRM9 83 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 OR5AL1P0C617 328 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 HINT1P49773 126 aaPredicted RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 FAM90A2PQ658T7 463 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 C5orf17Q8NAS9 161 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 OR4B1Q8NGF8 309 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 IGHV3-72A0A0B4J1Y9 119 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 G3V318 75 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 RBFOX2O43251 390 aaKnown RBP eCLIP4.27□□□□□ -1.736e-8■■■□□ 15.7
TOPBP1-201ENST00000260810 Q1RN00 199 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 GTF2H5Q6ZYL4 71 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 FAM168AQ92567 244 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TRAPPC1Q9Y5R8 145 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 LINC00312Q9Y6C7 94 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 M0R1W7 72 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 SLC35E3Q7Z769 313 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 PRSS3P2Q8NHM4 247 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 HIST1H2BAQ96A08 127 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 C16orf92Q96LL3 132 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 LINC00052Q96N35 136 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 PSMG3Q9BT73 122 aaPredicted RBP4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 TPPP3Q9BW30 176 aa4.27□□□□□ -1.73
TOPBP1-201ENST00000260810 PPIAL4CA0A0B4J2A2 164 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 IGHV1-3A0A0C4DH29 117 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 IGHV2-70DA0A0C4DH43 119 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 F5H697 171 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 SLC17A3O00476 420 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 BRI3O95415 125 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 STAG3L3P0CL85 134 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 SAA1P0DJI8 122 aaPredicted RBP4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 PPIAL4GP0DN37 164 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 COX7A1P24310 79 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 MMDQ15546 238 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 CDPF1Q6NVV7 123 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 TREML4Q6UXN2 200 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 OR8I2Q8N0Y5 310 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 ABHD12Q8N2K0 398 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 NUDT10Q8NFP7 164 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 TRGV11A0A075B6L2 103 aa4.26□□□□□ -1.73
TOPBP1-201ENST00000260810 TRAV34A0A0B4J273 112 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms