RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SLC35E1Q96K37 410 aa11□□□□□ -0.65
CLK3-223ENST00000568488 TMPRSS5Q9H3S3 457 aa11□□□□□ -0.65
CLK3-223ENST00000568488 TRAV8-2A0A0B4J237 113 aa10.99□□□□□ -0.65
CLK3-223ENST00000568488 PRB4P10163 310 aaPredicted RBP10.99□□□□□ -0.65
CLK3-223ENST00000568488 MEF2DQ14814 521 aa10.99□□□□□ -0.65
CLK3-223ENST00000568488 SNX29P2Q8IUI4 249 aa10.99□□□□□ -0.65
CLK3-223ENST00000568488 OR1B1Q8NGR6 318 aa10.99□□□□□ -0.65
CLK3-223ENST00000568488 VSIG2Q96IQ7 327 aa10.99□□□□□ -0.65
CLK3-223ENST00000568488 TRAV9-2A0A087WT02 112 aa10.98□□□□□ -0.65
CLK3-223ENST00000568488 SNURFLB1AK76 121 aa10.98□□□□□ -0.65
CLK3-223ENST00000568488 H7BYZ3 331 aa10.98□□□□□ -0.65
CLK3-223ENST00000568488 TMEM127O75204 238 aa10.98□□□□□ -0.65
CLK3-223ENST00000568488 ZFAND1Q8TCF1 268 aa10.98□□□□□ -0.65
CLK3-223ENST00000568488 U3KQ87 197 aa10.98□□□□□ -0.65
CLK3-223ENST00000568488 SMIM31A0A1B0GVY4 71 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 NPIPB6E9PJ23 425 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 CDS2O95674 445 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 OR5AC1P0C628 307 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 GPX4P36969 197 aaPredicted RBP10.97□□□□□ -0.65
CLK3-223ENST00000568488 LHFPL1Q86WI0 220 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 LGI3Q8N145 548 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 OR8A1Q8NGG7 326 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 LHFPL5Q8TAF8 219 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 FAM30AQ9NZY2 134 aa10.97□□□□□ -0.65
CLK3-223ENST00000568488 ORM2P19652 201 aa10.96□□□□□ -0.65
CLK3-223ENST00000568488 CDKN1BP46527 198 aa10.96□□□□□ -0.65
CLK3-223ENST00000568488 GABARAPL2P60520 117 aa10.96□□□□□ -0.65
CLK3-223ENST00000568488 RNASE10Q5GAN6 216 aaKnown RBP10.96□□□□□ -0.65
CLK3-223ENST00000568488 CROCCP3Q8IVE0 287 aa10.96□□□□□ -0.65
CLK3-223ENST00000568488 SELENOHQ8IZQ5 122 aaKnown RBP10.96□□□□□ -0.65
CLK3-223ENST00000568488 OR4D5Q8NGN0 318 aa10.96□□□□□ -0.65
CLK3-223ENST00000568488 RBPMSQ93062 196 aaKnown RBP10.96□□□□□ -0.65
CLK3-223ENST00000568488 TMEM222Q9H0R3 208 aa10.96□□□□□ -0.65
CLK3-223ENST00000568488 TEX13DA0A0J9YY54 714 aaPredicted RBP10.95□□□□□ -0.66
CLK3-223ENST00000568488 B3GALNT1O75752 331 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 TMEM268Q5VZI3 342 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 Q6ZTI0 123 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 LINC00528Q8N1L1 170 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 OR13C8Q8NGS7 320 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 DTD1Q8TEA8 209 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 GLYATL2Q8WU03 294 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 GPR82Q96P67 336 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 TRGV9Q99603 122 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 MSRB1Q9NZV6 116 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 LY96Q9Y6Y9 160 aa10.95□□□□□ -0.66
CLK3-223ENST00000568488 TRGV2A0A075B6R0 118 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 TNFAIP8O95379 198 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 TGFBR1P36897 503 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 KIR3DS1Q14943 382 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 SCGB2B2Q4G0G5 96 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 GGNBP1Q5YKI7 109 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 MARCH1Q8TCQ1 289 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 ICOSQ9Y6W8 199 aa10.94□□□□□ -0.66
CLK3-223ENST00000568488 CFDP00746 253 aaPredicted RBP10.93□□□□□ -0.66
CLK3-223ENST00000568488 CD3DP04234 171 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 SULT1A3P0DMM9 295 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 SULT1A4P0DMN0 295 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 LRRC20Q8TCA0 184 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 TMEM147Q9BVK8 224 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 RBKSQ9H477 322 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 CACFD1Q9UGQ2 172 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 SLC45A2Q9UMX9 530 aa10.93□□□□□ -0.66
CLK3-223ENST00000568488 GATA2P23769 480 aaPredicted RBP10.92□□□□□ -0.66
CLK3-223ENST00000568488 RPS19P39019 145 aaKnown RBP10.92□□□□□ -0.66
CLK3-223ENST00000568488 PSG3Q16557 428 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 LYPD5Q6UWN5 251 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 TERB2Q8NHR7 220 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 NTN5Q8WTR8 489 aaPredicted RBP10.92□□□□□ -0.66
CLK3-223ENST00000568488 C20orf144Q9BQM9 153 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 PARD6GQ9BYG4 376 aaPredicted RBP10.92□□□□□ -0.66
CLK3-223ENST00000568488 NAA60Q9H7X0 242 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 COMMD3Q9UBI1 195 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 PAIP2BQ9ULR5 123 aaKnown RBP10.92□□□□□ -0.66
CLK3-223ENST00000568488 RNF213Q63HN8 5207 aa10.92□□□□□ -0.66
CLK3-223ENST00000568488 IGKV1OR2-108A0A075B7D4 117 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 PAX4O43316 350 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 PSCAO43653 123 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 CXCL3P19876 107 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 S100A7P31151 101 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 IZUMO2Q6UXV1 221 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 BPIFCQ8NFQ6 507 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 C14orf166Q9Y224 244 aaKnown RBP10.91□□□□□ -0.66
CLK3-223ENST00000568488 TMEM56-RWDD3S4R434 201 aa10.91□□□□□ -0.66
CLK3-223ENST00000568488 J3KRW8 73 aa10.9□□□□□ -0.66
CLK3-223ENST00000568488 EVI2AP22794 236 aa10.9□□□□□ -0.66
CLK3-223ENST00000568488 GFI1BQ5VTD9 330 aa10.9□□□□□ -0.66
CLK3-223ENST00000568488 CCDC190Q86UF4 302 aa10.9□□□□□ -0.66
CLK3-223ENST00000568488 THAP8Q8NA92 274 aa10.9□□□□□ -0.66
CLK3-223ENST00000568488 RPUSD4Q96CM3 377 aaKnown RBP10.9□□□□□ -0.66
CLK3-223ENST00000568488 LINC00467Q9BRT7 94 aa10.9□□□□□ -0.66
CLK3-223ENST00000568488 ZNF324O75467 553 aaPredicted RBP10.89□□□□□ -0.67
CLK3-223ENST00000568488 OXTP01178 125 aa10.89□□□□□ -0.67
CLK3-223ENST00000568488 ATP5IP56385 69 aaPredicted RBP10.89□□□□□ -0.67
CLK3-223ENST00000568488 RAB11AP62491 216 aa10.89□□□□□ -0.67
CLK3-223ENST00000568488 DAZ2Q13117 558 aaKnown RBP10.89□□□□□ -0.67
CLK3-223ENST00000568488 TMEM182Q6ZP80 229 aaPredicted RBP10.89□□□□□ -0.67
CLK3-223ENST00000568488 OR4D10Q8NGI6 311 aa10.89□□□□□ -0.67
CLK3-223ENST00000568488 HSPB7Q9UBY9 170 aa10.89□□□□□ -0.67
CLK3-223ENST00000568488 TRGV1A0A0A0MS02 117 aa10.88□□□□□ -0.67
CLK3-223ENST00000568488 LSM3P62310 102 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms