RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NRN1Q9NPD7 142 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 KCNIP2Q9NS61 270 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 PXMP4Q9Y6I8 212 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 ELOA3CA0A087WX78 387 aaPredicted RBP12.83□□□□□ -0.36
CLN3-217ENST00000565354 A8MZ25 164 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 ODF3L2Q3SX64 289 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 Q5BKY6 102 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 C10orf113Q5VZT2 155 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 GPR82Q96P67 336 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 UHRF2Q96PU4 802 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 PFDN5Q99471 154 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 SHANK2-AS3Q9BTD1 123 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 SCRT1Q9BWW7 348 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 WDR61Q9GZS3 305 aaKnown RBP12.83□□□□□ -0.36
CLN3-217ENST00000565354 SLC25A32Q9H2D1 315 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 SLC39A9Q9NUM3 307 aa12.83□□□□□ -0.36
CLN3-217ENST00000565354 K7EQG2 157 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 DEFB131AP59861 70 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 LEMD1Q68G75 181 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 LINC00305Q7Z4B0 112 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 CHAC2Q8WUX2 184 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 AQP10Q96PS8 301 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 FAM110AQ9BQ89 295 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 MAP6D1Q9H9H5 199 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 DNAJC4Q9NNZ3 241 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 C19orf73Q9NVV2 129 aa12.82□□□□□ -0.36
CLN3-217ENST00000565354 ZNF688P0C7X2 276 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 RPL7P18124 248 aaKnown RBP12.81□□□□□ -0.36
CLN3-217ENST00000565354 ATF4P18848 351 aaPredicted RBP12.81□□□□□ -0.36
CLN3-217ENST00000565354 SNRPD3P62318 126 aaKnown RBP12.81□□□□□ -0.36
CLN3-217ENST00000565354 PRR20EP86478 221 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 PRR20CP86479 221 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 PRR20DP86480 221 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 PRR20BP86481 221 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 PRR20AP86496 221 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 PATE2Q6UY27 113 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 APRG1Q8IVJ8 170 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 DCANP1Q8TF63 244 aa12.81□□□□□ -0.36
CLN3-217ENST00000565354 ID1P41134 155 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 MEOX2P50222 304 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 ZNF266Q14584 549 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 FAM24BQ8N5W8 94 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 TM2D3Q9BRN9 247 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 RSG1Q9BU20 258 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 EDA2RQ9HAV5 297 aa12.8□□□□□ -0.36
CLN3-217ENST00000565354 LOC102724200A0A096LPH7 203 aaPredicted RBP12.79□□□□□ -0.36
CLN3-217ENST00000565354 SMLR1H3BR10 107 aa12.79□□□□□ -0.36
CLN3-217ENST00000565354 PSMG4Q5JS54 123 aa12.79□□□□□ -0.36
CLN3-217ENST00000565354 SAMD13Q5VXD3 122 aa12.79□□□□□ -0.36
CLN3-217ENST00000565354 Q6ZNX1 250 aa12.79□□□□□ -0.36
CLN3-217ENST00000565354 TMEM37Q8WXS4 190 aa12.79□□□□□ -0.36
CLN3-217ENST00000565354 TNFSF18Q9UNG2 199 aa12.79□□□□□ -0.36
CLN3-217ENST00000565354 RBMY1BA6NDE4 496 aaKnown RBP12.78□□□□□ -0.36
CLN3-217ENST00000565354 RBMY1EA6NEQ0 496 aaKnown RBP12.78□□□□□ -0.36
CLN3-217ENST00000565354 RBMY1DP0C7P1 496 aaKnown RBP12.78□□□□□ -0.36
CLN3-217ENST00000565354 BPIFA4PQ86YQ2 179 aa12.78□□□□□ -0.36
CLN3-217ENST00000565354 LRRC20Q8TCA0 184 aa12.78□□□□□ -0.36
CLN3-217ENST00000565354 GATAD1Q8WUU5 269 aa12.78□□□□□ -0.36
CLN3-217ENST00000565354 C16orf92Q96LL3 132 aa12.78□□□□□ -0.36
CLN3-217ENST00000565354 LINC00052Q96N35 136 aa12.78□□□□□ -0.36
CLN3-217ENST00000565354 WFDC1Q9HC57 220 aa12.78□□□□□ -0.36
CLN3-217ENST00000565354 hCG_2014768A0A024R1R8 64 aa12.77□□□□□ -0.37
CLN3-217ENST00000565354 ARPC5O15511 151 aa12.77□□□□□ -0.37
CLN3-217ENST00000565354 RPL35AP18077 110 aaKnown RBP12.77□□□□□ -0.37
CLN3-217ENST00000565354 ZNF124Q15973 351 aa12.77□□□□□ -0.37
CLN3-217ENST00000565354 FFAR4Q5NUL3 377 aa12.77□□□□□ -0.37
CLN3-217ENST00000565354 PARD6GQ9BYG4 376 aaPredicted RBP12.77□□□□□ -0.37
CLN3-217ENST00000565354 SEPSECSQ9HD40 501 aaKnown RBP12.77□□□□□ -0.37
CLN3-217ENST00000565354 BORCS7-ASMTA0A0B4J1R7 106 aa12.76□□□□□ -0.37
CLN3-217ENST00000565354 RNF222A6NCQ9 220 aa12.76□□□□□ -0.37
CLN3-217ENST00000565354 PSMB3P49720 205 aa12.76□□□□□ -0.37
CLN3-217ENST00000565354 APOC4P55056 127 aa12.76□□□□□ -0.37
CLN3-217ENST00000565354 HAGHQ16775 308 aa12.76□□□□□ -0.37
CLN3-217ENST00000565354 STHQ8IWL8 128 aa12.76□□□□□ -0.37
CLN3-217ENST00000565354 ISLRO14498 428 aa12.75□□□□□ -0.37
CLN3-217ENST00000565354 FAM78BQ5VT40 261 aa12.75□□□□□ -0.37
CLN3-217ENST00000565354 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.75□□□□□ -0.37
CLN3-217ENST00000565354 HSD17B11Q8NBQ5 300 aa12.75□□□□□ -0.37
CLN3-217ENST00000565354 MFFQ9GZY8 342 aa12.75□□□□□ -0.37
CLN3-217ENST00000565354 TRAV5A0A0B4J249 113 aa12.74□□□□□ -0.37
CLN3-217ENST00000565354 G3V3Q6 166 aa12.74□□□□□ -0.37
CLN3-217ENST00000565354 JTBO76095 146 aa12.74□□□□□ -0.37
CLN3-217ENST00000565354 GCSAMLQ5JQS6 135 aa12.74□□□□□ -0.37
CLN3-217ENST00000565354 MORN5Q5VZ52 161 aa12.74□□□□□ -0.37
CLN3-217ENST00000565354 LINC00322Q6ZN03 302 aaPredicted RBP12.74□□□□□ -0.37
CLN3-217ENST00000565354 KNCNA6PVL3 124 aa12.73□□□□□ -0.37
CLN3-217ENST00000565354 ACOT6Q3I5F7 207 aaPredicted RBP12.73□□□□□ -0.37
CLN3-217ENST00000565354 ACTL10Q5JWF8 245 aa12.73□□□□□ -0.37
CLN3-217ENST00000565354 SPATA25Q9BR10 227 aa12.73□□□□□ -0.37
CLN3-217ENST00000565354 MRPL32Q9BYC8 188 aaKnown RBP12.73□□□□□ -0.37
CLN3-217ENST00000565354 TIMM9Q9Y5J7 89 aa12.73□□□□□ -0.37
CLN3-217ENST00000565354 ALMS1Q8TCU4 4167 aa12.73□□□□□ -0.37
CLN3-217ENST00000565354 A0A087X0K7 114 aa12.72□□□□□ -0.37
CLN3-217ENST00000565354 SOCS3O14543 225 aa12.72□□□□□ -0.37
CLN3-217ENST00000565354 TAAR5O14804 337 aa12.72□□□□□ -0.37
CLN3-217ENST00000565354 LCN15Q6UWW0 184 aa12.72□□□□□ -0.37
CLN3-217ENST00000565354 RPRMQ9NS64 109 aa12.72□□□□□ -0.37
CLN3-217ENST00000565354 SNRPCP09234 159 aaKnown RBP12.71□□□□□ -0.37
CLN3-217ENST00000565354 CXCL2P19875 107 aa12.71□□□□□ -0.37
CLN3-217ENST00000565354 RHOBP62745 196 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms