RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 CAMLGP49069 296 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 SELENOTP62341 195 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 PAFAH1B2P68402 229 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 ATP6V1FQ16864 119 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 ASCL2Q99929 193 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 SMIM3Q9BZL3 60 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 TUBA4BQ9H853 241 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 WDR83OSQ9Y284 106 aa10.71□□□□□ -0.69
USP3-221ENST00000561442 HELTA6NFD8 242 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 HYPMO75409 117 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 OR5G3P0C626 314 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 FRMD6-AS1P0C7T7 363 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 BLOC1S1P78537 153 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 RAB31Q13636 194 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 MIC13Q5XKP0 118 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 GGTLC1Q9BX51 225 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 SLC25A22Q9H936 323 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 C19orf73Q9NVV2 129 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 HIGD1AQ9Y241 93 aa10.7□□□□□ -0.7
USP3-221ENST00000561442 RAB5CP51148 216 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 ODF3L2Q3SX64 289 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 LEMD1Q68G75 181 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 SIGLEC15Q6ZMC9 328 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 FAM24BQ8N5W8 94 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 SCRT1Q9BWW7 348 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 ARV1Q9H2C2 271 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 SRD5A3Q9H8P0 318 aa10.69□□□□□ -0.7
USP3-221ENST00000561442 HUWE1Q7Z6Z7 4374 aaKnown RBP10.68□□□□□ -0.7
USP3-221ENST00000561442 ZNF98A6NK75 572 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 COX7A2P2O60397 106 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 SEC11BP0C7V7 166 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 PATE2Q6UY27 113 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 OR8I2Q8N0Y5 310 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 UHRF2Q96PU4 802 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 ATP5SQ99766 215 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 B9D2Q9BPU9 175 aa10.68□□□□□ -0.7
USP3-221ENST00000561442 SLC25A39Q9BZJ4 359 aaPredicted RBP10.68□□□□□ -0.7
USP3-221ENST00000561442 H3BRN7 92 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 SULT1A2P50226 295 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 PLP1P60201 277 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 ZNF266Q14584 549 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 ZNF124Q15973 351 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 C1orf194Q5T5A4 169 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 APRG1Q8IVJ8 170 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 PCNPQ8WW12 178 aaKnown RBP10.67□□□□□ -0.7
USP3-221ENST00000561442 SHANK2-AS3Q9BTD1 123 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 NPCDR1Q9BY65 106 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 WFDC1Q9HC57 220 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 PXMP4Q9Y6I8 212 aa10.67□□□□□ -0.7
USP3-221ENST00000561442 TRAV2A0A0B4J234 112 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 RBMY1BA6NDE4 496 aaKnown RBP10.66□□□□□ -0.7
USP3-221ENST00000561442 RBMY1EA6NEQ0 496 aaKnown RBP10.66□□□□□ -0.7
USP3-221ENST00000561442 K7EQG2 157 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 RBMY1DP0C7P1 496 aaKnown RBP10.66□□□□□ -0.7
USP3-221ENST00000561442 ZNF688P0C7X2 276 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 B2MP61769 119 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 PRR20EP86478 221 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 PRR20CP86479 221 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 PRR20DP86480 221 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 PRR20BP86481 221 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 PRR20AP86496 221 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 DCANP1Q8TF63 244 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 WDR61Q9GZS3 305 aaKnown RBP10.66□□□□□ -0.7
USP3-221ENST00000561442 MAP6D1Q9H9H5 199 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 NRN1Q9NPD7 142 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 SLC39A9Q9NUM3 307 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 FBXL17Q9UF56 701 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 COL7A1Q02388 2944 aa10.66□□□□□ -0.7
USP3-221ENST00000561442 A8MZ25 164 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 MPDU1O75352 247 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 S100A7P31151 101 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 RPL29P47914 159 aaKnown RBP10.65□□□□□ -0.7
USP3-221ENST00000561442 DEFB131AP59861 70 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 FAM74A1Q5RGS3 127 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 PXDC1Q5TGL8 231 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 RPL7L1Q6DKI1 246 aaKnown RBP10.65□□□□□ -0.7
USP3-221ENST00000561442 Q6ZRG5 221 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 SBSPONQ8IVN8 264 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 SUN5Q8TC36 379 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 TMED6Q8WW62 240 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 TMEM37Q8WXS4 190 aa10.65□□□□□ -0.7
USP3-221ENST00000561442 IFNA5P01569 189 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 GALR1P47211 349 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 GCSAMLQ5JQS6 135 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 C10orf113Q5VZT2 155 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 LINC00305Q7Z4B0 112 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 ZNF709Q8N972 641 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 SCGB1C1Q8TD33 95 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 LINC00052Q96N35 136 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 RSG1Q9BU20 258 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 DNAJC4Q9NNZ3 241 aa10.64□□□□□ -0.71
USP3-221ENST00000561442 ELOA3CA0A087WX78 387 aaPredicted RBP10.63□□□□□ -0.71
USP3-221ENST00000561442 ZNF705EA8MWA4 302 aaPredicted RBP10.63□□□□□ -0.71
USP3-221ENST00000561442 SPP1P10451 314 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 RPL35AP18077 110 aaKnown RBP10.63□□□□□ -0.71
USP3-221ENST00000561442 CMC4P56277 68 aaPredicted RBP10.63□□□□□ -0.71
USP3-221ENST00000561442 HAGHQ16775 308 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 PSMG4Q5JS54 123 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 MORN5Q5VZ52 161 aa10.63□□□□□ -0.71
USP3-221ENST00000561442 S100A7AQ86SG5 101 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 151.1 ms