RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 TOMM20LQ6UXN7 152 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 MIR17HGQ75NE6 70 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 SSX7Q7RTT5 188 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 IQCF2Q8IXL9 164 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 TMEM167BQ9NRX6 74 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 PPP5D1E7EU14 171 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 HMGB3O15347 200 aaKnown RBP11.08□□□□□ -0.64
SHMT2-208ENST00000553868 OR7C2O60412 319 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 ARL14EPLP0DKL9 152 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 FGF8P55075 233 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-208ENST00000553868 FAM106AQ4KMX7 169 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 KHDC1LQ5JSQ8 128 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 EIF4E3Q8N5X7 224 aaKnown RBP11.08□□□□□ -0.64
SHMT2-208ENST00000553868 WIPF2Q8TF74 440 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-208ENST00000553868 NARS2Q96I59 477 aaKnown RBP11.08□□□□□ -0.64
SHMT2-208ENST00000553868 SHANK2-AS3Q9BTD1 123 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 SLC25A39Q9BZJ4 359 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-208ENST00000553868 MANBALQ9NQG1 85 aa11.08□□□□□ -0.64
SHMT2-208ENST00000553868 H3BRN7 92 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 HSPB1P04792 205 aaKnown RBP11.07□□□□□ -0.64
SHMT2-208ENST00000553868 ZP3P21754 424 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 GCHFRP30047 84 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 PEA15Q15121 130 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 USF2Q15853 346 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-208ENST00000553868 SPATA31B1PQ5VZV4 182 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 SLC7A5P1Q8MH63 180 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 C4orf3Q8WVX3 66 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 FAM210AQ96ND0 272 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 UHRF2Q96PU4 802 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 OR5B12Q96R08 314 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 METTL26Q96S19 204 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 SMDT1Q9H4I9 107 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 ZFAND3Q9H8U3 227 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 GNG13Q9P2W3 67 aa11.07□□□□□ -0.64
SHMT2-208ENST00000553868 IGHV3-35A0A0C4DH35 117 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 TRBV12-3P01733 135 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 NPPCP23582 126 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 CCL20P78556 96 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 GUK1Q16774 197 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 RPEL1Q2QD12 228 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 GPHB5Q86YW7 130 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 PAXXQ9BUH6 204 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 C20orf24Q9BUV8 137 aa11.06□□□□□ -0.64
SHMT2-208ENST00000553868 EIF5A2Q9GZV4 153 aaKnown RBP11.06□□□□□ -0.64
SHMT2-208ENST00000553868 RBFOX3A6NFN3 312 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 CD33P20138 364 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 UBE2L3P68036 154 aaKnown RBP11.05□□□□□ -0.64
SHMT2-208ENST00000553868 BPIFA4PQ86YQ2 179 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 MUC7Q8TAX7 377 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 TMEM190Q8WZ59 177 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 DPF1Q92782 380 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 FAM167A-AS1Q96KT0 104 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 CITED4Q96RK1 184 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 SLC25A2Q9BXI2 301 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 OR51M1Q9H341 326 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 TMEM14CQ9P0S9 112 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 VAX2Q9UIW0 290 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 TSSC4Q9Y5U2 329 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-208ENST00000553868 ARL2-SNX15V9GYD0 113 aa11.05□□□□□ -0.64
SHMT2-208ENST00000553868 TRAV5A0A0B4J249 113 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 ZNF98A6NK75 572 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 I3L521 148 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 EIF3GO75821 320 aaKnown RBP eCLIP11.04□□□□□ -0.64
SHMT2-208ENST00000553868 BCL2P10415 239 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 CD28P10747 220 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 RPL7P18124 248 aaKnown RBP11.04□□□□□ -0.64
SHMT2-208ENST00000553868 HOXD3P31249 432 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-208ENST00000553868 BMI1P35226 326 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 HAGHQ16775 308 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 TCTEX1D4Q5JR98 221 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 TOR2AQ5JU69 321 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 ZNF506Q5JVG8 444 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 C1orf194Q5T5A4 169 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 MORN5Q5VZ52 161 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 KLHL30-AS1Q8NEE0 82 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 OR4F17Q8NGA8 305 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 GRAMD2BQ96HH9 432 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 GPR82Q96P67 336 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 OR4F4Q96R69 305 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 TXNDC17Q9BRA2 123 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 SCRT1Q9BWW7 348 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 TREM1Q9NP99 234 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 UFC1Q9Y3C8 167 aa11.04□□□□□ -0.64
SHMT2-208ENST00000553868 LOC102723971A0A1B0GUV8 181 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 A0A1W2PS18 150 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 ZNF320A2RRD8 509 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 ADARB2-AS1A8MUL3 147 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 K7EMT4 169 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 CRYBB3P26998 211 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 SUN5Q8TC36 379 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 TMPRSS5Q9H3S3 457 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 TMEM231Q9H6L2 316 aa11.03□□□□□ -0.64
SHMT2-208ENST00000553868 FRAS1Q86XX4 4008 aa11.02□□□□□ -0.65
SHMT2-208ENST00000553868 IGHV4OR15-8A0A075B7B6 117 aa11.02□□□□□ -0.65
SHMT2-208ENST00000553868 A0A087WW49 117 aa11.02□□□□□ -0.65
SHMT2-208ENST00000553868 LINC01619G3V211 115 aa11.02□□□□□ -0.65
SHMT2-208ENST00000553868 LGALS9O00182 355 aa11.02□□□□□ -0.65
SHMT2-208ENST00000553868 NDUFS6O75380 124 aaKnown RBP11.02□□□□□ -0.65
SHMT2-208ENST00000553868 HIST1H1EP10412 219 aaKnown RBP11.02□□□□□ -0.65
SHMT2-208ENST00000553868 OR8I2Q8N0Y5 310 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms