RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ATP5J2P56134 94 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 KIAA1644Q3SXP7 199 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 LINC00322Q6ZN03 302 aaPredicted RBP12.79□□□□□ -0.36
COL4A1-204ENST00000543140 GOLT1AQ6ZVE7 132 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 TMEM219Q86XT9 240 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 OR4F17Q8NGA8 305 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 FAM231DQ6ZW35 169 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 Q71RC1 249 aaPredicted RBP12.78□□□□□ -0.36
COL4A1-204ENST00000543140 GBGT1Q8N5D6 347 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 LINC00469Q8N7U9 141 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 FMC1Q96HJ9 113 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 GNB1LQ9BYB4 327 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 PRDM13Q9H4Q3 707 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 TRBV19A0A075B6N1 114 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 G3V318 75 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 MBD6Q96DN6 1003 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 ASCL2Q99929 193 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 CHRDL1Q9BU40 450 aa12.78□□□□□ -0.36
COL4A1-204ENST00000543140 IGLC2P0DOY2 106 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 CRISP2P16562 243 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 TMEM136Q6ZRR5 245 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 NRGNQ92686 78 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 MLST8Q9BVC4 326 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 FAM208BQ5VWN6 2430 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 ZNF462Q96JM2 2506 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 IZUMO1RA6ND01 250 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 LTAP01374 205 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 CTSGP08311 255 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 PAX8Q06710 450 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 C10orf105Q8TEF2 133 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 TMEM18Q96B42 140 aa12.77□□□□□ -0.37
COL4A1-204ENST00000543140 CENPEQ02224 2701 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 F2Z2F3 143 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 RPL19P84098 196 aaKnown RBP12.76□□□□□ -0.37
COL4A1-204ENST00000543140 C15orf32Q32M92 178 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 PRNTQ86SH4 94 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 GRAMD2BQ96HH9 432 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 ZNF48Q96MX3 618 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-204ENST00000543140 TP53TG3Q9ULZ0 132 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 IGHV4-30-2A0A087WSY4 118 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 TRAV40A0A0B4J280 105 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 CLEC2AQ6UVW9 174 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 CIARTQ8N365 385 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-204ENST00000543140 NUP35Q8NFH5 326 aa12.76□□□□□ -0.37
COL4A1-204ENST00000543140 TRBV9A0A0B4J1U6 114 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 MRPS12O15235 138 aaKnown RBP12.75□□□□□ -0.37
COL4A1-204ENST00000543140 AMY1AP04745 511 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 WDR73Q6P4I2 378 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 ZNF414Q96IQ9 312 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 NEU1Q99519 415 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 SOX21Q9Y651 276 aaPredicted RBP12.75□□□□□ -0.37
COL4A1-204ENST00000543140 HIGD1CA8MV81 97 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 IGLV2-11P01706 119 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 GZMBP10144 247 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 RHOGP84095 191 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 SIGLEC15Q6ZMC9 328 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 Q86TA4 180 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 MS4A10Q96PG2 267 aa12.75□□□□□ -0.37
COL4A1-204ENST00000543140 POLR3KQ9Y2Y1 108 aaPredicted RBP12.75□□□□□ -0.37
COL4A1-204ENST00000543140 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL4A1-204ENST00000543140 CSMD2Q7Z408 3487 aa12.74□□□□□ -0.37
COL4A1-204ENST00000543140 M0R3E3 92 aa12.74□□□□□ -0.37
COL4A1-204ENST00000543140 GPR183P32249 361 aa12.74□□□□□ -0.37
COL4A1-204ENST00000543140 JOSD1Q15040 202 aaPredicted RBP12.74□□□□□ -0.37
COL4A1-204ENST00000543140 PRR31Q5SQ13 230 aa12.74□□□□□ -0.37
COL4A1-204ENST00000543140 FAM110DQ8TAY7 271 aaPredicted RBP12.74□□□□□ -0.37
COL4A1-204ENST00000543140 ZNF331Q9NQX6 463 aaPredicted RBP12.74□□□□□ -0.37
COL4A1-204ENST00000543140 IGHV1-69DA0A0B4J2H0 117 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 SERF1AO75920 110 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 IGHV1-69P01742 117 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 LINC00310P59036 64 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 TCF24Q7RTU0 167 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 BAGE3Q86Y29 109 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 LURAP1LQ8IV03 231 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 TSKUQ8WUA8 353 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 MT-ND6P03923 174 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 C5orf56Q8N8D9 126 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 SMIM12Q96EX1 92 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 LINC00527Q9UJ94 153 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 RNF24Q9Y225 148 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 LRRK2Q5S007 2527 aa12.73□□□□□ -0.37
COL4A1-204ENST00000543140 VWC2LB2RUY7 222 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 P01737 135 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 CLEC3BP05452 202 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 IGHV4-38-2P0DP08 117 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 RPP21Q9H633 154 aaKnown RBP12.72□□□□□ -0.37
COL4A1-204ENST00000543140 GNB4Q9HAV0 340 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 CAMPP49913 170 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 DAZAP1Q96EP5 407 aaKnown RBP12.72□□□□□ -0.37
COL4A1-204ENST00000543140 POLQO75417 2590 aa12.72□□□□□ -0.37
COL4A1-204ENST00000543140 DEFA6Q01524 100 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 SLAQ13239 276 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 GDF5OSQ5U4N7 250 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 C19orf71A6NCJ1 209 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 BMPR1BO00238 502 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 HLA-DQA1P01909 254 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 APCSP02743 223 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 ZNF502Q8TBZ5 544 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 PIFOQ8TCI5 191 aa12.71□□□□□ -0.37
COL4A1-204ENST00000543140 C14orf144Q96I85 54 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms