RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	PMAIP1	Q13794	54 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	FAM201A	Q5SY85	155 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	HES3	Q5TGS1	186 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	TCF23	Q7RTU1	214 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	TRAPPC6B	Q86SZ2	158 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	LYPD6	Q86Y78	171 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	SSC4D	Q8WTU2	575 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	LRRC29	Q8WV35	223 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	C11orf52	Q96A22	123 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	MGST2	Q99735	147 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	PDCD1LG2	Q9BQ51	273 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	PLA2G2F	Q9BZM2	168 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	AGPAT4-IT1	Q9H0P7	198 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	RNASE7	Q9H1E1	156 aa	Known RBP	4.36	□□□□□ -1.71
CD44-231	ENST00000531110	ZNF665	Q9H7R5	613 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	ZNF286A	Q9HBT8	521 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	CKLF	Q9UBR5	152 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	CACNG5	Q9UF02	275 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	TMEM14A	Q9Y6G1	99 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	ANAPC1	Q9H1A4	1944 aa		4.36	□□□□□ -1.71
CD44-231	ENST00000531110	NUP214	P35658	2090 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-231	ENST00000531110	THSD7A	Q9UPZ6	1657 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	ADAMTSL1	Q8N6G6	1762 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	TRAV27	A0A087WT01	109 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	TRAV4	A0A0B4J268	109 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	MYBPHL	A2RUH7	354 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110		A8MWL6	223 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	PLPP1	O14494	284 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	TSHB	P01222	138 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	CXCL8	P10145	99 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	EMD	P50402	254 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	LINC01547	P58512	204 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-231	ENST00000531110	RPS18	P62269	152 aa	Known RBP	4.35	□□□□□ -1.71
CD44-231	ENST00000531110	HBG1	P69891	147 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	HBG2	P69892	147 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	DEFB121	Q5J5C9	76 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	FAM120AOS	Q5T036	256 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	HRCT1	Q6UXD1	115 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	AMN1	Q8IY45	258 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	MMD2	Q8IY49	270 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	POM121L12	Q8N7R1	296 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	IL1F10	Q8WWZ1	152 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	CARD19	Q96LW7	228 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	NAA38	Q9BRA0	125 aa	Known RBP	4.35	□□□□□ -1.71
CD44-231	ENST00000531110	SERP1	Q9Y6X1	66 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	NLRC5	Q86WI3	1866 aa		4.35	□□□□□ -1.71
CD44-231	ENST00000531110	LCT	P09848	1927 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	SMIM26	A0A096LP01	95 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	TRAV13-1	A0A0B4J241	112 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	TRBV7-6	A0A0J9YX20	115 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	SMIM27	A0A1W2PRY6	76 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	IZUMO1R	A6ND01	250 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	C17orf51	A8MQB3	221 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	ENSA	O43768	121 aa	Known RBP	4.34	□□□□□ -1.71
CD44-231	ENST00000531110	PPY	P01298	95 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	GYPB	P06028	91 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	GP1BB	P13224	206 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	CTLA4	P16410	223 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	INSL3	P51460	131 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	CLDN17	P56750	224 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	UBE2D3	P61077	147 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	PPP1CA	P62136	330 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	UBE2D2	P62837	147 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	QRFP	P83859	136 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	TMEM170B	Q5T4T1	132 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	PDPN	Q86YL7	162 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	OR5C1	Q8NGR4	320 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	OR2A1	Q8NGT9	310 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	OR2T6	Q8NHC8	308 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	HDHD3	Q9BSH5	251 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-231	ENST00000531110	SHANK2-AS3	Q9BTD1	123 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	SRXN1	Q9BYN0	137 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	MYO16	Q9Y6X6	1858 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	VWA8	A3KMH1	1905 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	NUMA1	Q14980	2115 aa		4.34	□□□□□ -1.71
CD44-231	ENST00000531110	DOCK8	Q8NF50	2099 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	DOCK3	Q8IZD9	2030 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	IGKV6D-41	A0A0C4DH26	115 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	FAM236D	A0A1B0GTK5	79 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	TCRBV4S1A1T	A0A5B7	111 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110		H7C1H1	209 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	CFC1B	P0CG36	223 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	CFC1	P0CG37	223 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	FAM236C	P0DP71	79 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	AQP1	P29972	269 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	CSN1S1	P47710	185 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	CRIP2	P52943	208 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-231	ENST00000531110	ATP5E	P56381	51 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-231	ENST00000531110	FXYD6P3	P58550	94 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	HIST1H4A	P62805	103 aa	Known RBP	4.33	□□□□□ -1.72
CD44-231	ENST00000531110	POLR2L	P62875	67 aa	Known RBP	4.33	□□□□□ -1.72
CD44-231	ENST00000531110	SRY	Q05066	204 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	VGLL4	Q14135	290 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	TMEM30B	Q3MIR4	351 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	VMA21	Q3ZAQ7	101 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	C22orf39	Q6P5X5	142 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	PRR15	Q8IV56	129 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	CLECL1	Q8IZS7	167 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	DRAM1	Q8N682	238 aa		4.33	□□□□□ -1.72
CD44-231	ENST00000531110	NFAM1	Q8NET5	270 aa	Predicted RBP	4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 293 ms