RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IGHV4OR15-8A0A075B7B6 117 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 A0A087WW49 117 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 A0A1W2PPV4 95 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 A0A1W2PS18 150 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 YIF1AO95070 293 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 IL4P05112 153 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 OR5G3P0C626 314 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 ORM2P19652 201 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 CRYBB3P26998 211 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 HOXD3P31249 432 aaPredicted RBP5.64□□□□□ -1.51
CD44-228ENST00000528455 SULT1A2P50226 295 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 FHL3Q13643 280 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 TMEM41BQ5BJD5 291 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 KHDC1LQ5JSQ8 128 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 AKR1C8PQ5T2L2 129 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 C1orf194Q5T5A4 169 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 C10orf113Q5VZT2 155 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 PATE2Q6UY27 113 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 C18orf65Q6ZTR6 163 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 RPP25LQ8N5L8 163 aaKnown RBP5.64□□□□□ -1.51
CD44-228ENST00000528455 OR10G4Q8NGN3 311 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 OR10G9Q8NGN4 311 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 OR10G7Q8NGN6 311 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 TMED6Q8WW62 240 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 TMEM37Q8WXS4 190 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 SAT2Q96F10 170 aaPredicted RBP5.64□□□□□ -1.51
CD44-228ENST00000528455 ACTR3CQ9C0K3 210 aaPredicted RBP5.64□□□□□ -1.51
CD44-228ENST00000528455 SH3BGRL3Q9H299 93 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 RPRMQ9NS64 109 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 RABAC1Q9UI14 185 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 UFC1Q9Y3C8 167 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 RFNGQ9Y644 331 aa5.64□□□□□ -1.51
CD44-228ENST00000528455 ZNF320A2RRD8 509 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 SEC14L6B5MCN3 397 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 COX7A2P2O60397 106 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 CD5P06127 495 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 C8orf88P0DMB2 117 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 RHOBP62745 196 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 BLOC1S1P78537 153 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 LCE1DQ5T752 114 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 FAM78BQ5VT40 261 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 ALKAL2Q6UX46 152 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 ZNF767PQ75MW2 155 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 LINC00305Q7Z4B0 112 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 STXBP6Q8NFX7 210 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 OR4F17Q8NGA8 305 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 OR1B1Q8NGR6 318 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 MBD3L1Q8WWY6 194 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 TMEM190Q8WZ59 177 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 MARC2Q969Z3 335 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 OR4F4Q96R69 305 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 METTL26Q96S19 204 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 NEU1Q99519 415 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 MRPL32Q9BYC8 188 aaKnown RBP5.63□□□□□ -1.51
CD44-228ENST00000528455 SEPSECSQ9HD40 501 aaKnown RBP5.63□□□□□ -1.51
CD44-228ENST00000528455 DAZ1Q9NQZ3 744 aaKnown RBP5.63□□□□□ -1.51
CD44-228ENST00000528455 SIGLEC8Q9NYZ4 499 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 PEMTQ9UBM1 199 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 UBQLN2Q9UHD9 624 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 HIGD1AQ9Y241 93 aa5.63□□□□□ -1.51
CD44-228ENST00000528455 WNK1Q9H4A3 2382 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 TRAV1-1A0A0B4J248 108 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 IGHV3-35A0A0C4DH35 117 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 A8MWP6 167 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 TEX46H3BTG2 121 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 BUB3O43684 328 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 CBLN1P23435 193 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 BMI1P35226 326 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 SYNJ2BPP57105 145 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 TAS2R45P59539 299 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 LYZP61626 148 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 IFITM2Q01629 132 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 USF2Q15853 346 aaPredicted RBP5.62□□□□□ -1.51
CD44-228ENST00000528455 NSUN5P1Q3KNT7 163 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 UNQ9165/PRO28630Q6UXU0 137 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 WFDC9Q8NEX5 89 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 DLX4Q92988 240 aaPredicted RBP5.62□□□□□ -1.51
CD44-228ENST00000528455 NARS2Q96I59 477 aaKnown RBP5.62□□□□□ -1.51
CD44-228ENST00000528455 GPR82Q96P67 336 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 SHANK2-AS3Q9BTD1 123 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 C20orf24Q9BUV8 137 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 PBDC1Q9BVG4 233 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 SLC25A39Q9BZJ4 359 aaPredicted RBP5.62□□□□□ -1.51
CD44-228ENST00000528455 TMEM231Q9H6L2 316 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 VSIRQ9H7M9 311 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 TECRQ9NZ01 308 aaKnown RBP5.62□□□□□ -1.51
CD44-228ENST00000528455 SMPXQ9UHP9 88 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 FUT9Q9Y231 359 aa5.62□□□□□ -1.51
CD44-228ENST00000528455 IGHV7-4-1A0A0J9YVY3 117 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 CTXND1A0A1B0GTU2 59 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 ZNF98A6NK75 572 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 OVOL1O14753 267 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 STAG3L2P0CL84 134 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 STAG3L3P0CL85 134 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 RAB2AP61019 212 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 RAB14P61106 215 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 PMS2P11Q13670 270 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 DEFB136Q30KP8 78 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 GCSAMLQ5JQS6 135 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 OR9G4Q8NGQ1 327 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms