RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CXCL1P09341 107 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRGC1P0CF51 173 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 AKAIN1P0CW23 69 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SAA1P0DJI8 122 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 PYYP10082 97 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 GZMBP10144 247 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCL5P13501 91 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TPT1P13693 172 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 HLA-DRB4P13762 266 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FABP4P15090 132 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MUC1P15941 1255 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF19P17023 458 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RNASE4P34096 147 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF93P35789 620 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TGFBR1P36897 503 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ETV6P41212 452 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 EIF2B2P49770 351 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FXYD2P54710 66 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FOXA1P55317 472 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARPP19P56211 112 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TPPP2P59282 170 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 PKIAP61925 76 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SNRPD3P62318 126 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MRPS36P82909 103 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF117Q03924 483 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF90Q03938 601 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF816Q0VGE8 651 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KLRD1Q13241 179 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 EBI3Q14213 229 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 DIAPH2-AS1Q14236 149 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 HES1Q14469 280 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF79Q15937 498 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ASB16-AS1Q495Z4 193 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCSMST1Q4G0I0 132 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPANXN5Q5MJ07 72 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LDLRAD2Q5SZI1 272 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LCE3AQ5TA76 89 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM244Q5VVB8 128 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q5W150 140 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF660Q6AZW8 331 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCIMPQ6UWF3 145 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TEX261Q6UWH6 196 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LYZL1Q6UWQ5 148 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LCN15Q6UWW0 184 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IZUMO2Q6UXV1 221 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 DPPA3Q6W0C5 159 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM91Q6ZNR0 172 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q6ZS52 159 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 C2orf91Q6ZV80 131 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTAP5-5Q701N2 237 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 AAED1Q7RTV5 226 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TEN1Q86WV5 123 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 BPIFA4PQ86YQ2 179 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00471Q8N535 108 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KCNRGQ8N5I3 272 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00311Q8N616 119 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TEX29Q8N6K0 151 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CYB561D1Q8N8Q1 229 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q8N9L7 120 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q8NAQ8 132 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ST20-AS1Q8NBB2 130 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q8NDZ9 215 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR10P1Q8NGE3 313 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR5D14Q8NGL3 314 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR5H6Q8NGV6 325 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 PFN4Q8NHR9 129 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 WFDC5Q8TCV5 224 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SFT2D1Q8WV19 159 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 DEDD2Q8WXF8 326 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 DIRC1Q969H9 104 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RAB37Q96AX2 223 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RBMXL1Q96E39 390 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MRPS24Q96EL2 167 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF714Q96N38 554 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR4C12Q96R67 309 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SDF2Q99470 211 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC35B3Q9H1N7 401 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 DUSP21Q9H596 190 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 NAA60Q9H7X0 242 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00574Q9H8X3 128 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 NIT2Q9NQR4 276 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SAR1AQ9NR31 198 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPRMQ9NS64 109 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ASF1BQ9NVP2 202 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAIMQ9NVQ4 179 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TXNL4BQ9NX01 149 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCN3BQ9NY72 215 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TAS2R8Q9NYW2 309 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TAS2R4Q9NYW5 299 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR5V1Q9UGF6 321 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KLK12Q9UKR0 248 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 BOKQ9UMX3 212 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF443Q9Y2A4 671 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 NOP16Q9Y3C1 178 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RNF11Q9Y3C5 154 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TIMM9Q9Y5J7 89 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM215AQ9Y5M1 114 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MPC1Q9Y5U8 109 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IER3IP1Q9Y5U9 82 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIF25-AS1Q9Y6Z4 181 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms