RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 MORN5Q5VZ52 161 aa22.23■■□□□ 1.15
LIMCH1-211ENST00000509638 GBGT1Q8N5D6 347 aa22.23■■□□□ 1.15
LIMCH1-211ENST00000509638 ZNF471Q9BX82 626 aaPredicted RBP22.23■■□□□ 1.15
LIMCH1-211ENST00000509638 C9orf62Q8N4C0 152 aa22.22■■□□□ 1.15
LIMCH1-211ENST00000509638 GNPNAT1Q96EK6 184 aaPredicted RBP22.22■■□□□ 1.15
LIMCH1-211ENST00000509638 FBN3Q75N90 2809 aa22.22■■□□□ 1.15
LIMCH1-211ENST00000509638 PRB2P02812 416 aaPredicted RBP22.21■■□□□ 1.15
LIMCH1-211ENST00000509638 STXBP6Q8NFX7 210 aa22.21■■□□□ 1.15
LIMCH1-211ENST00000509638 OR2G3Q8NGZ4 309 aa22.21■■□□□ 1.15
LIMCH1-211ENST00000509638 MS4A6AQ9H2W1 248 aa22.21■■□□□ 1.15
LIMCH1-211ENST00000509638 TFPI2P48307 235 aa22.21■■□□□ 1.15
LIMCH1-211ENST00000509638 FAM78BQ5VT40 261 aa22.2■■□□□ 1.14
LIMCH1-211ENST00000509638 RNF24Q9Y225 148 aa22.2■■□□□ 1.14
LIMCH1-211ENST00000509638 NKX2-5P52952 324 aaPredicted RBP22.19■■□□□ 1.14
LIMCH1-211ENST00000509638 GPR82Q96P67 336 aa22.19■■□□□ 1.14
LIMCH1-211ENST00000509638 SEPSECSQ9HD40 501 aaKnown RBP22.19■■□□□ 1.14
LIMCH1-211ENST00000509638 AURKAIP1Q9NWT8 199 aaPredicted RBP22.19■■□□□ 1.14
LIMCH1-211ENST00000509638 OR4C46A6NHA9 309 aa22.18■■□□□ 1.14
LIMCH1-211ENST00000509638 GALR1P47211 349 aa22.18■■□□□ 1.14
LIMCH1-211ENST00000509638 RAB2AP61019 212 aa22.18■■□□□ 1.14
LIMCH1-211ENST00000509638 PAFAH1B2P68402 229 aa22.18■■□□□ 1.14
LIMCH1-211ENST00000509638 GTSCR1Q86UQ5 136 aa22.18■■□□□ 1.14
LIMCH1-211ENST00000509638 DNASE2O00115 360 aaPredicted RBP22.17■■□□□ 1.14
LIMCH1-211ENST00000509638 RPL7P18124 248 aaKnown RBP22.17■■□□□ 1.14
LIMCH1-211ENST00000509638 ACOT6Q3I5F7 207 aaPredicted RBP22.17■■□□□ 1.14
LIMCH1-211ENST00000509638 SPATA31B1PQ5VZV4 182 aa22.17■■□□□ 1.14
LIMCH1-211ENST00000509638 NRN1Q9NPD7 142 aa22.17■■□□□ 1.14
LIMCH1-211ENST00000509638 TRAV5A0A0B4J249 113 aa22.16■■□□□ 1.14
LIMCH1-211ENST00000509638 M6PRP20645 277 aa22.16■■□□□ 1.14
LIMCH1-211ENST00000509638 CD81P60033 236 aa22.16■■□□□ 1.14
LIMCH1-211ENST00000509638 SERF2P84101 59 aa22.16■■□□□ 1.14
LIMCH1-211ENST00000509638 WFDC3Q8IUB2 231 aa22.16■■□□□ 1.14
LIMCH1-211ENST00000509638 MRPL32Q9BYC8 188 aaKnown RBP22.16■■□□□ 1.14
LIMCH1-211ENST00000509638 MIR17HGQ75NE6 70 aa22.15■■□□□ 1.14
LIMCH1-211ENST00000509638 DCANP1Q8TF63 244 aa22.15■■□□□ 1.14
LIMCH1-211ENST00000509638 FUT9Q9Y231 359 aa22.15■■□□□ 1.14
LIMCH1-211ENST00000509638 SMAD5-AS1Q9Y6J3 95 aa22.15■■□□□ 1.14
LIMCH1-211ENST00000509638 TRAV2A0A0B4J234 112 aa22.14■■□□□ 1.13
LIMCH1-211ENST00000509638 CD7P09564 240 aa22.14■■□□□ 1.13
LIMCH1-211ENST00000509638 SPP1P10451 314 aa22.14■■□□□ 1.13
LIMCH1-211ENST00000509638 BPIFA4PQ86YQ2 179 aa22.14■■□□□ 1.13
LIMCH1-211ENST00000509638 TPT1P13693 172 aaKnown RBP22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 ATF4P18848 351 aaPredicted RBP22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 RHOBP62745 196 aa22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 EIF5AP63241 154 aaKnown RBP22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 OR10G4Q8NGN3 311 aa22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 OR10G9Q8NGN4 311 aa22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 OR10G7Q8NGN6 311 aa22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 STOML3Q8TAV4 291 aa22.13■■□□□ 1.13
LIMCH1-211ENST00000509638 K7EQG2 157 aa22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 MRPS12O15235 138 aaKnown RBP22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 SLC25A2Q9BXI2 301 aa22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 MBP02144 154 aa22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 FAM122CQ6P4D5 195 aa22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 BAP18Q8IXM2 172 aa22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 FAM24BQ8N5W8 94 aa22.12■■□□□ 1.13
LIMCH1-211ENST00000509638 TMEM41BQ5BJD5 291 aa22.11■■□□□ 1.13
LIMCH1-211ENST00000509638 C17orf77Q96MU5 243 aa22.11■■□□□ 1.13
LIMCH1-211ENST00000509638 C4BPBP20851 252 aa22.1■■□□□ 1.13
LIMCH1-211ENST00000509638 ODF3L2Q3SX64 289 aa22.1■■□□□ 1.13
LIMCH1-211ENST00000509638 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa22.1■■□□□ 1.13
LIMCH1-211ENST00000509638 FAM167A-AS1Q96KT0 104 aa22.1■■□□□ 1.13
LIMCH1-211ENST00000509638 WFDC10AQ9H1F0 79 aa22.1■■□□□ 1.13
LIMCH1-211ENST00000509638 UBQLN2Q9UHD9 624 aa22.1■■□□□ 1.13
LIMCH1-211ENST00000509638 EIF3GO75821 320 aaKnown RBP eCLIP22.09■■□□□ 1.13
LIMCH1-211ENST00000509638 DEFA6Q01524 100 aa22.09■■□□□ 1.13
LIMCH1-211ENST00000509638 Q8N1Y9 231 aa22.09■■□□□ 1.13
LIMCH1-211ENST00000509638 RPP25LQ8N5L8 163 aaKnown RBP22.09■■□□□ 1.13
LIMCH1-211ENST00000509638 A0A087X0K7 114 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 A0A1W2PPV4 95 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 BOLA2-SMG1P6H3BVE0 249 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 K7EIL1 84 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 SNRPCP09234 159 aaKnown RBP22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 MEOX2P50222 304 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 AKR1C8PQ5T2L2 129 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 SLC51BQ86UW2 128 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 RPRMQ9NS64 109 aa22.08■■□□□ 1.13
LIMCH1-211ENST00000509638 SOCS3O14543 225 aa22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 SEC11BP0C7V7 166 aa22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 ZNF688P0C7X2 276 aa22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 IGLC2P0DOY2 106 aa22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 PYYP10082 97 aa22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 CDC34P49427 236 aaPredicted RBP22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 TMEM14CQ9P0S9 112 aa22.08■■□□□ 1.12
LIMCH1-211ENST00000509638 OR7C2O60412 319 aa22.07■■□□□ 1.12
LIMCH1-211ENST00000509638 KHDC3LQ587J8 217 aa22.07■■□□□ 1.12
LIMCH1-211ENST00000509638 TMED6Q8WW62 240 aa22.07■■□□□ 1.12
LIMCH1-211ENST00000509638 MAP6D1Q9H9H5 199 aa22.07■■□□□ 1.12
LIMCH1-211ENST00000509638 C19orf73Q9NVV2 129 aa22.07■■□□□ 1.12
LIMCH1-211ENST00000509638 TAS2R45P59539 299 aa22.06■■□□□ 1.12
LIMCH1-211ENST00000509638 OR11H12B2RN74 326 aa22.05■■□□□ 1.12
LIMCH1-211ENST00000509638 H3BQ15 152 aa22.05■■□□□ 1.12
LIMCH1-211ENST00000509638 SAMD13Q5VXD3 122 aa22.05■■□□□ 1.12
LIMCH1-211ENST00000509638 HRH4Q9H3N8 390 aa22.05■■□□□ 1.12
LIMCH1-211ENST00000509638 BOLA1Q9Y3E2 137 aa22.05■■□□□ 1.12
LIMCH1-211ENST00000509638 H3BTX0 84 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 HMGB3O15347 200 aaKnown RBP22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 SNRPD3P62318 126 aaKnown RBP22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 C16orf92Q96LL3 132 aa22.04■■□□□ 1.12
LIMCH1-211ENST00000509638 OR10J4P0C629 311 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms