RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TENM3Q9P273 2699 aa11.73□□□□□ -0.53
LIME1-209ENST00000494776 WDR83OSQ9Y284 106 aa11.73□□□□□ -0.53
LIME1-209ENST00000494776 HUWE1Q7Z6Z7 4374 aaKnown RBP11.72□□□□□ -0.53
LIME1-209ENST00000494776 MPC2O95563 127 aa11.72□□□□□ -0.53
LIME1-209ENST00000494776 RPL7P18124 248 aaKnown RBP11.72□□□□□ -0.53
LIME1-209ENST00000494776 FGF7P21781 194 aa11.72□□□□□ -0.53
LIME1-209ENST00000494776 OR5C1Q8NGR4 320 aa11.72□□□□□ -0.53
LIME1-209ENST00000494776 RNF183Q96D59 192 aa11.72□□□□□ -0.53
LIME1-209ENST00000494776 EDA2RQ9HAV5 297 aa11.72□□□□□ -0.53
LIME1-209ENST00000494776 ELOA3CA0A087WX78 387 aaPredicted RBP11.71□□□□□ -0.53
LIME1-209ENST00000494776 C3orf84H3BNL1 204 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 ISLRO14498 428 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 LYL1P12980 280 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 CLINT1Q14677 625 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 C10orf113Q5VZT2 155 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 MIC13Q5XKP0 118 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 MORN3Q6PF18 240 aaPredicted RBP11.71□□□□□ -0.53
LIME1-209ENST00000494776 PATE2Q6UY27 113 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 LINC00305Q7Z4B0 112 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 TRPT1Q86TN4 253 aaKnown RBP11.71□□□□□ -0.53
LIME1-209ENST00000494776 RNF126Q9BV68 326 aa11.71□□□□□ -0.53
LIME1-209ENST00000494776 MPDU1O75352 247 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 SPP1P10451 314 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 CXCL3P19876 107 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 B2MP61769 119 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 OR1L4Q8NGR5 311 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 GATAD1Q8WUU5 269 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 DNAJC4Q9NNZ3 241 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 MBD2Q9UBB5 411 aa11.7□□□□□ -0.54
LIME1-209ENST00000494776 SOCS3O14543 225 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 RPL29P47914 159 aaKnown RBP11.69□□□□□ -0.54
LIME1-209ENST00000494776 NUTF2P61970 127 aaKnown RBP11.69□□□□□ -0.54
LIME1-209ENST00000494776 OPCMLQ14982 345 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 FCN2Q15485 313 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 THAP6Q8TBB0 222 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 LRRC20Q8TCA0 184 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 PFDN5Q99471 154 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 RPRMQ9NS64 109 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 SLC39A9Q9NUM3 307 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 PXMP4Q9Y6I8 212 aa11.69□□□□□ -0.54
LIME1-209ENST00000494776 NBEAL2Q6ZNJ1 2754 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 RPL12P30050 165 aaKnown RBP11.68□□□□□ -0.54
LIME1-209ENST00000494776 PRR20EP86478 221 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 PRR20CP86479 221 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 PRR20DP86480 221 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 PRR20BP86481 221 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 PRR20AP86496 221 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 TMEM41BQ5BJD5 291 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 EBLN2Q6P2I7 272 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 FOXI2Q6ZQN5 318 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 ZNF709Q8N972 641 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 TMEM37Q8WXS4 190 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 RARRES2Q99969 163 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 NPCDR1Q9BY65 106 aa11.68□□□□□ -0.54
LIME1-209ENST00000494776 KMT2CQ8NEZ4 4911 aaKnown RBP11.67□□□□□ -0.54
LIME1-209ENST00000494776 H3BMM0 161 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 IGKV3-20P01619 116 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 HLA-DRB4P13762 266 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 DEFB1P60022 68 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 ZFAND6Q6FIF0 208 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 BPIFA4PQ86YQ2 179 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 OR11H7Q8NGC8 314 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 OR4B1Q8NGF8 309 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 OR11H2Q8NH07 326 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 IL17DQ8TAD2 202 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 CHAC2Q8WUX2 184 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 SAV1Q9H4B6 383 aaPredicted RBP11.67□□□□□ -0.54
LIME1-209ENST00000494776 HSPB11Q9Y547 144 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 HLA-DRB4X5D2U9 266 aa11.67□□□□□ -0.54
LIME1-209ENST00000494776 A0A0J9YWU9 116 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 IFNA5P01569 189 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 GDF5OSQ5U4N7 250 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 SPATA31B1PQ5VZV4 182 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 IGFL4Q6B9Z1 124 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 C20orf173Q96LM9 149 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 ATP5SQ99766 215 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 SMIM3Q9BZL3 60 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 KCNIP2Q9NS61 270 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 STAB2Q8WWQ8 2551 aa11.66□□□□□ -0.54
LIME1-209ENST00000494776 A0A087X0K7 114 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 C17orf112F2Z3M2 114 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 C4BPBP20851 252 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 CASC10Q5T4H9 136 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 RNF182Q8N6D2 247 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 SCGB1C1Q8TD33 95 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 C17orf77Q96MU5 243 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 C1QTNF4Q9BXJ3 329 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 WDR61Q9GZS3 305 aaKnown RBP11.65□□□□□ -0.54
LIME1-209ENST00000494776 CLEC5AQ9NY25 188 aa11.65□□□□□ -0.54
LIME1-209ENST00000494776 F6UB75 175 aa11.64□□□□□ -0.55
LIME1-209ENST00000494776 SNRPCP09234 159 aaKnown RBP11.64□□□□□ -0.55
LIME1-209ENST00000494776 OXA1LQ15070 435 aa11.64□□□□□ -0.55
LIME1-209ENST00000494776 MORN5Q5VZ52 161 aa11.64□□□□□ -0.55
LIME1-209ENST00000494776 ZNF738Q8NE65 137 aa11.64□□□□□ -0.55
LIME1-209ENST00000494776 XCL2Q9UBD3 114 aa11.64□□□□□ -0.55
LIME1-209ENST00000494776 TRAV8-2A0A0B4J237 113 aa11.63□□□□□ -0.55
LIME1-209ENST00000494776 TRAV5A0A0B4J249 113 aa11.63□□□□□ -0.55
LIME1-209ENST00000494776 A0A0J9YX75 114 aa11.63□□□□□ -0.55
LIME1-209ENST00000494776 GIG44P09565 113 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms