RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 TOMM20LQ6UXN7 152 aa11.4□□□□□ -0.59
CHD3-211ENST00000481999 NHLRC2Q8NBF2 726 aa11.4□□□□□ -0.59
CHD3-211ENST00000481999 OR1B1Q8NGR6 318 aa11.4□□□□□ -0.59
CHD3-211ENST00000481999 LINC00479Q96M42 142 aa11.4□□□□□ -0.59
CHD3-211ENST00000481999 CCDC168Q8NDH2 2452 aa11.4□□□□□ -0.59
CHD3-211ENST00000481999 TMEM11P17152 192 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 MRPL54Q6P161 138 aaKnown RBP11.39□□□□□ -0.59
CHD3-211ENST00000481999 SIGLECL1Q8N7X8 197 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 C10orf105Q8TEF2 133 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 CD33P20138 364 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 BTF3P20290 206 aaKnown RBP11.39□□□□□ -0.59
CHD3-211ENST00000481999 KRTAP10-9P60411 292 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 RASL11AQ6T310 242 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 TEX43Q6ZNM6 134 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 TMEM219Q86XT9 240 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 NPBQ8NG41 125 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 TRGV9Q99603 122 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 CHRDL1Q9BU40 450 aa11.39□□□□□ -0.59
CHD3-211ENST00000481999 TRAV40A0A0B4J280 105 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 LINC01548A6NM66 108 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 MYCNOSP40205 109 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 UBE2E1P51965 193 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 ZNF331Q9NQX6 463 aaPredicted RBP11.38□□□□□ -0.59
CHD3-211ENST00000481999 I3L2K1 104 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 GPX1P07203 203 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 BCL6BQ8N143 479 aaPredicted RBP11.38□□□□□ -0.59
CHD3-211ENST00000481999 Q8N6K4 173 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 MBD6Q96DN6 1003 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 GRAMD2BQ96HH9 432 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 PIMREGQ9BSJ6 248 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 ZNF586Q9NXT0 402 aa11.38□□□□□ -0.59
CHD3-211ENST00000481999 K7EIM0 57 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 BMPR1BO00238 502 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 CA1P00915 261 aaPredicted RBP11.37□□□□□ -0.59
CHD3-211ENST00000481999 APCSP02743 223 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 IGHV4-38-2P0DP08 117 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 KIAA1644Q3SXP7 199 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 TMEM116Q8NCL8 245 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 WIPF2Q8TF74 440 aaPredicted RBP11.37□□□□□ -0.59
CHD3-211ENST00000481999 KCNS1Q96KK3 526 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 RNF5Q99942 180 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 C20orf144Q9BQM9 153 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 CORTO00230 105 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 ZNF253O75346 499 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 SRIP30626 198 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 TMEM183BQ1AE95 376 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 EPDR1Q9UM22 224 aa11.37□□□□□ -0.59
CHD3-211ENST00000481999 TRAV34A0A0B4J273 112 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 EREGO14944 169 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 PSG1P11464 419 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 UBE2G1P62253 170 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 CCDC144NLQ6NUI1 221 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 CLEC2AQ6UVW9 174 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 Q8N9W7 124 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 NUDT10Q8NFP7 164 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 SMIM12Q96EX1 92 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 NUDT11Q96G61 164 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 CREBBPQ92793 2442 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 IGHV7-81A0A0B4J1V7 117 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 M0R143 59 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 NPFFO15130 113 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 HYPMO75409 117 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 IGLC1P0CG04 106 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 HIST1H1EP10412 219 aaKnown RBP11.36□□□□□ -0.59
CHD3-211ENST00000481999 MINOS1Q5TGZ0 78 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 ARPC1AQ92747 370 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 MINOS1-NBL1R4GNA1 71 aa11.36□□□□□ -0.59
CHD3-211ENST00000481999 VWC2LB2RUY7 222 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 SLC25A5P05141 298 aaKnown RBP11.35□□□□□ -0.59
CHD3-211ENST00000481999 EGR2P11161 476 aaPredicted RBP11.35□□□□□ -0.59
CHD3-211ENST00000481999 VN1R17PQ8TDU5 208 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 BLNKQ8WV28 456 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 FANCD2OSQ96PS1 177 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 TBL2Q9Y4P3 447 aaKnown RBP11.35□□□□□ -0.59
CHD3-211ENST00000481999 KLF12Q9Y4X4 402 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 IGHV3OR16-8A0A075B7F1 116 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 AVPP01185 164 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 IGKV1-17P01599 117 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 NBEAP1P0C6P0 100 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 AMTP48728 403 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 LYZP61626 148 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 GNG5P63218 68 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 SGK494Q96LW2 274 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 RBM14Q96PK6 669 aaKnown RBP11.35□□□□□ -0.59
CHD3-211ENST00000481999 VAMP8Q9BV40 100 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 SNHG12Q9BXW3 62 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 LINC00527Q9UJ94 153 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 FBXL7Q9UJT9 491 aa11.35□□□□□ -0.59
CHD3-211ENST00000481999 IGHV3-35A0A0C4DH35 117 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 A0A1W2PS18 150 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 PRR27Q6MZM9 219 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 ZNF562Q6V9R5 426 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 NUP35Q8NFH5 326 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 TSKUQ8WUA8 353 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 TMEM68Q96MH6 324 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 RCHY1Q96PM5 261 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 NRN1Q9NPD7 142 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 PGPA6NDG6 321 aa11.34□□□□□ -0.59
CHD3-211ENST00000481999 ZNF324O75467 553 aaPredicted RBP11.34□□□□□ -0.59
CHD3-211ENST00000481999 PLP1P60201 277 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms