RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 BAK1Q16611 211 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 TRIQKQ629K1 86 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 CYP2G1PQ6ZSU1 146 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 POM121L12Q8N7R1 296 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 C7orf50Q9BRJ6 194 aaKnown RBP11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 FLVCR2Q9UPI3 526 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 HECTD4Q9Y4D8 3996 aa11.83□□□□□ -0.52
CCDC28B-204ENST00000469003 SMCO3A2RU48 225 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 PMS2P5A8MQ11 134 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 H3BRN7 92 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 FAM222AQ5U5X8 452 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 AMTNQ6UX39 209 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 SMIM8Q96KF7 97 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 FAM210BQ96KR6 192 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 NIPSNAP3BQ9BS92 247 aa11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 SLC25A39Q9BZJ4 359 aaPredicted RBP11.82□□□□□ -0.52
CCDC28B-204ENST00000469003 LOC102723971A0A1B0GUV8 181 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 SSSCA1O60232 199 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 DUSP14O95147 198 aaKnown RBP11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 IL5P05113 134 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 OR4E1P0C645 316 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 PLP1P60201 277 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 RAP2BP61225 183 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 OXA1LQ15070 435 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 RRN3P1Q2M238 152 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 IGF2BP2-AS1Q96M15 143 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 SHANK2-AS3Q9BTD1 123 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 HIGD1AQ9Y241 93 aa11.81□□□□□ -0.52
CCDC28B-204ENST00000469003 TRAV8-2A0A0B4J237 113 aa11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 HYPMO75409 117 aa11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 SELENOTP62341 195 aa11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 DLK1P80370 383 aa11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 IGFL4Q6B9Z1 124 aa11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 LINC00336Q6ZUF6 198 aa11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 SDHCQ99643 169 aaPredicted RBP11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 YTHDF2Q9Y5A9 579 aaKnown RBP11.8□□□□□ -0.52
CCDC28B-204ENST00000469003 CENPXA8MT69 81 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 FNDC10F2Z333 226 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 CCNKO75909 580 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 LINC00869P0C866 280 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 RPL7P18124 248 aaKnown RBP11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 ANXA7P20073 488 aaKnown RBP11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 BTCP35070 178 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 CNN1P51911 297 aaKnown RBP11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 FGL1Q08830 312 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 C4orf46Q504U0 113 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 TMEM14EPQ6UXP3 125 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 OR11H7Q8NGC8 314 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 TMEM208Q9BTX3 173 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 PLA2G2EQ9NZK7 142 aa11.79□□□□□ -0.52
CCDC28B-204ENST00000469003 LINC00854A0A1B0GVQ3 168 aa11.78□□□□□ -0.52
CCDC28B-204ENST00000469003 METTL15P1P0C7V9 234 aa11.78□□□□□ -0.52
CCDC28B-204ENST00000469003 RRAS2P62070 204 aaPredicted RBP11.78□□□□□ -0.52
CCDC28B-204ENST00000469003 S100A7AQ86SG5 101 aa11.78□□□□□ -0.52
CCDC28B-204ENST00000469003 RNF182Q8N6D2 247 aa11.78□□□□□ -0.52
CCDC28B-204ENST00000469003 NPVFQ9HCQ7 196 aa11.78□□□□□ -0.52
CCDC28B-204ENST00000469003 A0A087X0K7 114 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 K7EPK0 472 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 CRXO43186 299 aaPredicted RBP11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 TSC22D2O75157 780 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 SCGB1D2O95969 90 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 INSP01308 110 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 OR5G3P0C626 314 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 TAS2R30P59541 319 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 SPINK13Q1W4C9 94 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 IAH1Q2TAA2 248 aaPredicted RBP11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 ZBTB8BQ8NAP8 495 aaPredicted RBP11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 ZNF738Q8NE65 137 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 OR10P1Q8NGE3 313 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 MGAT4CQ9UBM8 478 aa11.77□□□□□ -0.53
CCDC28B-204ENST00000469003 M0R2Z0 102 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 HTN3P15516 51 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 B2MP61769 119 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 DAD1P61803 113 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 CNPY1Q3B7I2 92 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 TEPPQ6URK8 271 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 MITD1Q8WV92 249 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 UHRF2Q96PU4 802 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 RNF24Q9Y225 148 aa11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 RCL1Q9Y2P8 373 aaKnown RBP11.76□□□□□ -0.53
CCDC28B-204ENST00000469003 IL7P13232 177 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 LGALS9BQ3B8N2 356 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 PATE2Q6UY27 113 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 UBE2DNLQ8IWF7 75 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 ARL6Q9H0F7 186 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 GSKIPQ9P0R6 139 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 MUC4Q99102 2169 aa11.75□□□□□ -0.53
CCDC28B-204ENST00000469003 ZNF705GA8MUZ8 300 aaPredicted RBP11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 BOLA2-SMG1P6H3BVE0 249 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 M0R2N4 97 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 CXCL3P19876 107 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 SLC38A11Q08AI6 406 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 PXDC1Q5TGL8 231 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 ZNF546Q86UE3 836 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 BAP18Q8IXM2 172 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 OR8A1Q8NGG7 326 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 GGACTQ9BVM4 153 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 ARV1Q9H2C2 271 aa11.74□□□□□ -0.53
CCDC28B-204ENST00000469003 A0A1B0GVY2 172 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 LYRM9A8MSI8 78 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms