RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 Q6ZUT4 128 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 BRK1Q8WUW1 75 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 UBL5Q9BZL1 73 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 IGKV3D-15A0A087WSY6 115 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 ZNHIT1O43257 154 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 IGKV3-15P01624 115 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 ZNF492Q9P255 531 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 PRR32B1ATL7 298 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 FAM231DQ6ZW35 169 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 CARD19Q96LW7 228 aa10.91□□□□□ -0.66
USP40-208ENST00000450966 C12orf77C9JDV5 145 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 PAX1P15863 534 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 LYZL1Q6UWQ5 148 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 LINC01560Q8TB33 94 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 SRXN1Q9BYN0 137 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 TM4SF5O14894 197 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 CD69Q07108 199 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 SPATA31B1PQ5VZV4 182 aa10.9□□□□□ -0.66
USP40-208ENST00000450966 NBL1P41271 181 aa10.9□□□□□ -0.67
USP40-208ENST00000450966 FXYD7P58549 80 aa10.9□□□□□ -0.67
USP40-208ENST00000450966 LAMTOR3Q9UHA4 124 aa10.9□□□□□ -0.67
USP40-208ENST00000450966 CKAP5Q14008 2032 aa10.89□□□□□ -0.67
USP40-208ENST00000450966 TCRAP04437 139 aa10.89□□□□□ -0.67
USP40-208ENST00000450966 VWC2Q2TAL6 325 aa10.89□□□□□ -0.67
USP40-208ENST00000450966 ATG2BQ96BY7 2078 aa10.89□□□□□ -0.67
USP40-208ENST00000450966 IQCF6A8MYZ5 107 aa10.89□□□□□ -0.67
USP40-208ENST00000450966 RPL32P62910 135 aaKnown RBP10.89□□□□□ -0.67
USP40-208ENST00000450966 C17orf82Q86X59 251 aaPredicted RBP10.89□□□□□ -0.67
USP40-208ENST00000450966 ARID2Q68CP9 1835 aa10.89□□□□□ -0.67
USP40-208ENST00000450966 CEACAM4O75871 244 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 A0A087WV48 116 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 IGLV3-32A0A0A0MS00 114 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 GATD1Q8NB37 220 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 WIPF2Q8TF74 440 aaPredicted RBP10.88□□□□□ -0.67
USP40-208ENST00000450966 SAA1P0DJI8 122 aaPredicted RBP10.88□□□□□ -0.67
USP40-208ENST00000450966 SPATA25Q9BR10 227 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 WBP1Q96G27 269 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 SCN3AQ9NY46 2000 aa10.88□□□□□ -0.67
USP40-208ENST00000450966 H0YJW9 148 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 UQCRQO14949 82 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 IGHV3-48P01763 117 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 CD28P10747 220 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 RPL39P5Q59GN2 51 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 HIGD1BQ9P298 99 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 PEAR1Q5VY43 1037 aaPredicted RBP10.87□□□□□ -0.67
USP40-208ENST00000450966 METRNQ9UJH8 293 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 IGKV1-9A0A0C4DH69 117 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 E9PQ18 207 aa10.87□□□□□ -0.67
USP40-208ENST00000450966 OTOFQ9HC10 1997 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 UPK2O00526 184 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 TMEM86BQ8N661 226 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 PEMTQ9UBM1 199 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 DOCK3Q8IZD9 2030 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 A0A1B0GX51 115 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 ZNF726P1Q15940 193 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 ICE1Q9Y2F5 2266 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 TRGV3P03979 118 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 PVRIGQ6DKI7 326 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 IGHV3OR16-10A0A075B7F0 116 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 LYPD3O95274 346 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 PRCDQ00LT1 54 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 PKIGQ9Y2B9 76 aa10.86□□□□□ -0.67
USP40-208ENST00000450966 LEPROTO15243 131 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 SLC25A16P16260 332 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 C8orf46Q8TAG6 207 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 SLC50A1Q9BRV3 221 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 DPM3Q9P2X0 92 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 NUPR1O60356 82 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 MORN5Q5VZ52 161 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 ZNF747Q9BV97 191 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 IGHV3-64A0A075B6Q5 118 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 F5H768 121 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 QRFPP83859 136 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 BSPH1Q075Z2 132 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 FAM110AQ9BQ89 295 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 THSD7BQ9C0I4 1608 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 LEAP2Q969E1 77 aa10.85□□□□□ -0.67
USP40-208ENST00000450966 SHISA9B4DS77 424 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 A0A0B4J2C4 111 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 IGKV1-5P01602 117 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 SPTA1P02549 2419 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 SBF1O95248 1867 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 LINC01545Q5VT33 79 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 ZIC4Q8N9L1 334 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 M0QXV9 152 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 NDUFB8O95169 186 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 FAM27E3Q08E93 113 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 ACP7Q6ZNF0 438 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 LRRC75A-AS1Q8N1F1 130 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 C11orf52Q96A22 123 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 C20orf173Q96LM9 149 aa10.84□□□□□ -0.67
USP40-208ENST00000450966 FAM104BQ5XKR9 115 aa10.83□□□□□ -0.67
USP40-208ENST00000450966 Q8N8P6 123 aa10.83□□□□□ -0.67
USP40-208ENST00000450966 CFC1BP0CG36 223 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 CFC1P0CG37 223 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 ZNF329Q86UD4 541 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 SSC4DQ8WTU2 575 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 TOMM7Q9P0U1 55 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 CECR9P0C854 216 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 PRR31Q5SQ13 230 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms