RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IGLC2P0DOY2 106 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 IGLC3P0DOY3 106 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 GLRXP35754 106 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 KLRD1Q13241 179 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 PRSS57Q6UWY2 283 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 ZNF329Q86UD4 541 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 C18orf15Q96N68 181 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 SFXN3Q9BWM7 321 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 OR4C46A6NHA9 309 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 F2RL2O00254 374 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 ARF6P62330 175 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 ANKRD39Q53RE8 183 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 TMEM75Q8N9X5 138 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 PRSS33Q8NF86 280 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 CTSZQ9UBR2 303 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 MYO18BQ8IUG5 2567 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 UTP20O75691 2785 aaKnown RBP6.95□□□□□ -1.3
USP40-203ENST00000427112 CCDC168Q8NDH2 2452 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 IGKV3-7A0A075B6H7 116 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 FAM181BA6NEQ2 426 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 NDUFB3O43676 98 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 TGFAP01135 160 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 HTR1DP28221 377 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 Q8TAT8 98 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 ZNF257Q9Y2Q1 563 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 NCR2O95944 276 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 MBNL2Q5VZF2 373 aaKnown RBP6.94□□□□□ -1.3
USP40-203ENST00000427112 SIGMAR1Q99720 223 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 PPIAL4EA0A075B759 164 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 TM4SF5O14894 197 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 PPIAL4FP0DN26 164 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 GTSF1Q8WW33 167 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 GNB1LQ9BYB4 327 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 Q9H3A6 140 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 UBTD1Q9HAC8 227 aa6.94□□□□□ -1.3
USP40-203ENST00000427112 HRNRQ86YZ3 2850 aaPredicted RBP6.94□□□□□ -1.3
USP40-203ENST00000427112 IZUMO1RA6ND01 250 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 IGLV1-44P01699 117 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 PAX1P15863 534 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 HLA-DMBP28068 263 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 TSPOP30536 169 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 FCGR2BP31994 310 aaPredicted RBP6.93□□□□□ -1.3
USP40-203ENST00000427112 SLC25A34Q6PIV7 304 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 TMUB1Q9BVT8 246 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 TTTY13Q9BZ97 58 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 NCBP2LA6PVI3 153 aaKnown RBP6.93□□□□□ -1.3
USP40-203ENST00000427112 HLA-DQA1P01909 254 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 SCGB1C2P0DMR2 95 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 CFHR2P36980 270 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 SELENOTP62341 195 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 ADIPOQQ15848 244 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 INSIG2Q9Y5U4 225 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 SOX21Q9Y651 276 aaPredicted RBP6.93□□□□□ -1.3
USP40-203ENST00000427112 IGHV3OR16-10A0A075B7F0 116 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 ARMS2P0C7Q2 107 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 LOXL1Q08397 574 aaPredicted RBP6.93□□□□□ -1.3
USP40-203ENST00000427112 SLC25A48Q6ZT89 311 aaKnown RBP6.93□□□□□ -1.3
USP40-203ENST00000427112 SS18L2Q9UHA2 77 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 EPDR1Q9UM22 224 aa6.93□□□□□ -1.3
USP40-203ENST00000427112 TRGV8A0A0C4DH27 118 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 LEPROTL1O95214 131 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 TNFRSF1AP19438 455 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 FXYD5Q96DB9 178 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 IGF2BP2-AS1Q96M15 143 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 C8orf49Q96NF6 230 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 OSTCQ9NRP0 149 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 LINC00527Q9UJ94 153 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 SPCS1Q9Y6A9 102 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 IGKV1D-37A0A075B6S9 117 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 A0A0G2JNJ9 132 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 TMEM213A2RRL7 107 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 IGHG3P01860 377 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 HIST1H1EP10412 219 aaKnown RBP6.92□□□□□ -1.3
USP40-203ENST00000427112 FABP2P12104 132 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 CDKN1BP46527 198 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 RAB9AP51151 201 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 GFRALQ6UXV0 394 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 TNFRSF14Q92956 283 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 PERPQ96FX8 193 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 ABHD17AQ96GS6 310 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 TMEM191AQ9H0A3 160 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 Q9UFV3 132 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 HSPB8Q9UJY1 196 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 LOC107984156A0A0G2JMH3 177 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 C19orf67A6NJJ6 358 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 C9JCJ5 164 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 RPL27AP46776 148 aaKnown RBP6.92□□□□□ -1.3
USP40-203ENST00000427112 LRRC10Q5BKY1 277 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 TIMM23BQ5SRD1 257 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 C12orf54Q6X4T0 127 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 ARL17AQ8IVW1 177 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 OR4C13Q8NGP0 309 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 C20orf144Q9BQM9 153 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 NCOR1P1Q9H4R4 102 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 NDUFA4L2Q9NRX3 87 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 COX11Q9Y6N1 276 aa6.92□□□□□ -1.3
USP40-203ENST00000427112 A0A1W2PRE2 83 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 LHBP01229 141 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 CGB3P0DN86 165 aa6.91□□□□□ -1.3
USP40-203ENST00000427112 CGB7P0DN87 165 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms