RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 H3BRN7 92 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 CXorf1O96002 111 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 H2AFB1P0C5Y9 115 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 SULT1A2P50226 295 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 TEX261Q6UWH6 196 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 ALKAL2Q6UX46 152 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 SIGLEC15Q6ZMC9 328 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 OR2K2Q8NGT1 345 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 TMEM37Q8WXS4 190 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 UHRF2Q96PU4 802 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 IGHV3OR16-13A0A075B7E8 117 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 IGHV3-74A0A0B4J1X5 117 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 IGHV3-66A0A0C4DH42 116 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 TMEM213A2RRL7 107 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 CHEK1O14757 476 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 BUB3O43684 328 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 PPT1P50897 306 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 LCN12Q6JVE5 192 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 OR51M1Q9H341 326 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 RPRMQ9NS64 109 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 TRAV25A0A0B4J276 109 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 ID1P41134 155 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 GUK1Q16774 197 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 FAM74A1Q5RGS3 127 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 C16orf54Q6UWD8 224 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 PATE2Q6UY27 113 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 IL34Q6ZMJ4 242 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 ZNF767PQ75MW2 155 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 TCF24Q7RTU0 167 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 SFT2D1Q8WV19 159 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 RAB24Q969Q5 203 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 SAT2Q96F10 170 aaPredicted RBP7.69□□□□□ -1.18
CD44-207ENST00000425428 PAXXQ9BUH6 204 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 SCRT1Q9BWW7 348 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 VSIRQ9H7M9 311 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 SEPSECSQ9HD40 501 aaKnown RBP7.69□□□□□ -1.18
CD44-207ENST00000425428 TMEM167BQ9NRX6 74 aa7.69□□□□□ -1.18
CD44-207ENST00000425428 MAP1LC3B2A6NCE7 125 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 CSN3P07498 182 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 CMC4P56277 68 aaPredicted RBP7.68□□□□□ -1.18
CD44-207ENST00000425428 UBE2L3P68036 154 aaKnown RBP7.68□□□□□ -1.18
CD44-207ENST00000425428 GCSAMLQ5JQS6 135 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 MIR17HGQ75NE6 70 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 ZNF680Q8NEM1 530 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 MAP1LC3BQ9GZQ8 125 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 TMEM14CQ9P0S9 112 aa7.68□□□□□ -1.18
CD44-207ENST00000425428 FBN1P35555 2871 aaKnown RBP7.67□□□□□ -1.18
CD44-207ENST00000425428 STAB1Q9NY15 2570 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 OR4C46A6NHA9 309 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 IFNA1P01562 189 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 GUCA2BQ16661 112 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 LEMD1Q68G75 181 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 LCN15Q6UWW0 184 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 RPP25LQ8N5L8 163 aaKnown RBP7.67□□□□□ -1.18
CD44-207ENST00000425428 WFDC9Q8NEX5 89 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 AAMDCQ9H7C9 122 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 CLEC5AQ9NY25 188 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 U3KQE9 123 aa7.67□□□□□ -1.18
CD44-207ENST00000425428 IGKV3-7A0A075B6H7 116 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 HIST1H1EP10412 219 aaKnown RBP7.66□□□□□ -1.18
CD44-207ENST00000425428 PSMB3P49720 205 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 SNRPD3P62318 126 aaKnown RBP7.66□□□□□ -1.18
CD44-207ENST00000425428 PSG9Q00887 426 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 C16orf92Q96LL3 132 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 NRN1Q9NPD7 142 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 RFNGQ9Y644 331 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 TRAV5A0A0B4J249 113 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 HMGB3O15347 200 aaKnown RBP7.66□□□□□ -1.18
CD44-207ENST00000425428 APOHP02749 345 aaPredicted RBP7.66□□□□□ -1.18
CD44-207ENST00000425428 STAG3L2P0CL84 134 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 STAG3L3P0CL85 134 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 ARL14EPLP0DKL9 152 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 DEFB114Q30KQ6 69 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 BLNKQ8WV28 456 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 GLMPQ8WWB7 406 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 SPAG8Q99932 426 aaPredicted RBP7.66□□□□□ -1.18
CD44-207ENST00000425428 SLC50A1Q9BRV3 221 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 SLC25A2Q9BXI2 301 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 HRH4Q9H3N8 390 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 MLXQ9UH92 298 aa7.66□□□□□ -1.18
CD44-207ENST00000425428 TRAV2A0A0B4J234 112 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 TSPAN4O14817 238 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 NBEAP1P0C6P0 100 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 TAGLN2P37802 199 aaKnown RBP7.65□□□□□ -1.18
CD44-207ENST00000425428 CSN1S1P47710 185 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 PDE6HQ13956 83 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 CD300EQ496F6 205 aaPredicted RBP7.65□□□□□ -1.18
CD44-207ENST00000425428 SPATA31B1PQ5VZV4 182 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 GTSCR1Q86UQ5 136 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 WFDC3Q8IUB2 231 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 MBD3L1Q8WWY6 194 aa7.65□□□□□ -1.18
CD44-207ENST00000425428 NKX6-2Q9C056 277 aaPredicted RBP7.65□□□□□ -1.18
CD44-207ENST00000425428 TENM1Q9UKZ4 2725 aa7.65□□□□□ -1.19
CD44-207ENST00000425428 IGLV1-51P01701 117 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 OR10J4P0C629 311 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 IGLL1P15814 213 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 GCHFRP30047 84 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 TFPI2P48307 235 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 FGF8P55075 233 aaPredicted RBP7.64□□□□□ -1.19
CD44-207ENST00000425428 GBGT1Q8N5D6 347 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms