RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TCRAP04437 139 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 C8orf31Q8N9H6 132 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 TMEM116Q8NCL8 245 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 SOX21Q9Y651 276 aaPredicted RBP16.4■□□□□ 0.22
CLK3-202ENST00000395066 IGHV1-3A0A0C4DH29 117 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 hDV102S1A0JD36 115 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 TEX22C9J3V5 150 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 CT83Q5H943 113 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 ETFRF1Q6IPR1 90 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 S4R3C0 116 aa16.4■□□□□ 0.22
CLK3-202ENST00000395066 VAMP3Q15836 100 aa16.39■□□□□ 0.21
CLK3-202ENST00000395066 ASCL5Q7RTU5 278 aa16.39■□□□□ 0.21
CLK3-202ENST00000395066 TEX45Q8NA69 505 aa16.39■□□□□ 0.21
CLK3-202ENST00000395066 RBP4P02753 201 aa16.39■□□□□ 0.21
CLK3-202ENST00000395066 CRYGBP07316 175 aa16.39■□□□□ 0.21
CLK3-202ENST00000395066 PPP1R27Q86WC6 154 aa16.39■□□□□ 0.21
CLK3-202ENST00000395066 C19orf71A6NCJ1 209 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 CDKN1BP46527 198 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 C5orf17Q8NAS9 161 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 FMC1Q96HJ9 113 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 C17orf77Q96MU5 243 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 JKAMPQ9P055 326 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 KAAG1Q9UBP8 84 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 ASH1LQ9NR48 2969 aaKnown RBP16.38■□□□□ 0.21
CLK3-202ENST00000395066 TRAV30A0A087WSZ9 112 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 LTAP01374 205 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 IGLV1-47P01700 117 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 C8orf46Q8TAG6 207 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 ZNF492Q9P255 531 aa16.38■□□□□ 0.21
CLK3-202ENST00000395066 SPTA1P02549 2419 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 ZNF138P52744 262 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 ANKRD39Q53RE8 183 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 GOLT1AQ6ZVE7 132 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 PRNTQ86SH4 94 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 TMEM191AQ9H0A3 160 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 HIGD1AQ9Y241 93 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 F11RQ9Y624 299 aaKnown RBP16.37■□□□□ 0.21
CLK3-202ENST00000395066 BUB1B-PAK6H3BSN5 160 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 SLC25A34Q6PIV7 304 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 RBPMS2Q6ZRY4 209 aaKnown RBP16.37■□□□□ 0.21
CLK3-202ENST00000395066 ERASQ7Z444 233 aa16.37■□□□□ 0.21
CLK3-202ENST00000395066 LY6HO94772 140 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 NUDT3O95989 172 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 IGLC1P0CG04 106 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 PLGLAQ15195 96 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 LDLRAD2Q5SZI1 272 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 SRSF12Q8WXF0 261 aaKnown RBP16.36■□□□□ 0.21
CLK3-202ENST00000395066 DAZAP1Q96EP5 407 aaKnown RBP16.36■□□□□ 0.21
CLK3-202ENST00000395066 RALYQ9UKM9 306 aaKnown RBP16.36■□□□□ 0.21
CLK3-202ENST00000395066 HSBP1L1C9JCN9 74 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 PVRIGQ6DKI7 326 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 SLC25A39Q9BZJ4 359 aaPredicted RBP16.36■□□□□ 0.21
CLK3-202ENST00000395066 GFRA4Q9GZZ7 299 aa16.36■□□□□ 0.21
CLK3-202ENST00000395066 TAX1BP3O14907 124 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 BVES-AS1Q5T3Y7 98 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 LINC01560Q8TB33 94 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 MCRIP2Q9BUT9 160 aaKnown RBP16.35■□□□□ 0.21
CLK3-202ENST00000395066 MUC6Q6W4X9 2439 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 LOC102724200A0A096LPH7 203 aaPredicted RBP16.35■□□□□ 0.21
CLK3-202ENST00000395066 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.35■□□□□ 0.21
CLK3-202ENST00000395066 CHEK1O14757 476 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 LIPFP07098 398 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 NDFIP1Q9BT67 221 aa16.35■□□□□ 0.21
CLK3-202ENST00000395066 VSTM5A8MXK1 200 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 SAPCD1Q5SSQ6 148 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 Q86TA4 180 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 TIMM8BQ9Y5J9 83 aaPredicted RBP16.34■□□□□ 0.21
CLK3-202ENST00000395066 OR5AL1P0C617 328 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 COL8A1P27658 744 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 RHOGP84095 191 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 KLF17Q5JT82 389 aaPredicted RBP16.34■□□□□ 0.21
CLK3-202ENST00000395066 RPEQ96AT9 228 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 MAP1LC3CQ9BXW4 147 aa16.34■□□□□ 0.21
CLK3-202ENST00000395066 GRNP28799 593 aaKnown RBP16.33■□□□□ 0.21
CLK3-202ENST00000395066 TCF15Q12870 199 aa16.33■□□□□ 0.21
CLK3-202ENST00000395066 IGLV2-11P01706 119 aa16.33■□□□□ 0.2
CLK3-202ENST00000395066 BCL6BQ8N143 479 aaPredicted RBP16.33■□□□□ 0.2
CLK3-202ENST00000395066 SCRT2Q9NQ03 307 aa16.33■□□□□ 0.2
CLK3-202ENST00000395066 ANKHD1Q8IWZ3 2542 aaKnown RBP16.33■□□□□ 0.2
CLK3-202ENST00000395066 PPIAL4CA0A0B4J2A2 164 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 I3L2K1 104 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 IGKV1-17P01599 117 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 PPIAL4GP0DN37 164 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 PET117Q6UWS5 81 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 DEFB125Q8N687 156 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 RASL11BQ9BPW5 248 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 MUC21A0A0G2JKD1 596 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 MUC21A0A140T8X8 626 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 A0A1W2PRD5 423 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 A0A1W2PRF3 423 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 A0A1W2PRM7 423 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 FAM231BA6NCW3 169 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 ZNF785A8K8V0 405 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 CNIH1O95406 144 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 MUC21Q5SSG8 566 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 C12orf54Q6X4T0 127 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 ONECUT1Q9UBC0 465 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 APOBEC3AP31941 199 aaPredicted RBP16.32■□□□□ 0.2
CLK3-202ENST00000395066 RNF151Q2KHN1 245 aa16.32■□□□□ 0.2
CLK3-202ENST00000395066 HILPDAQ9Y5L2 63 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms