RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TSTD3H0UI37 97 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 I3L2K1 104 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 FRMD6-AS1P0C7T7 363 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 IGLC1P0CG04 106 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 CRISP2P16562 243 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 PRTN3P24158 256 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 UBE2G1P62253 170 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 GNG5P63218 68 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 TBX15Q96SF7 602 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 RASL11BQ9BPW5 248 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 SIRPDQ9H106 197 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 EPDR1Q9UM22 224 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 HIGD1AQ9Y241 93 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 PGPA6NDG6 321 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 MT-ND6P03923 174 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 PSG1P11464 419 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 SRD5A1P18405 259 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 LYZP61626 148 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 SLC35B1P78383 322 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 COX19Q49B96 90 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 KLF17Q5JT82 389 aaPredicted RBP12.24□□□□□ -0.45
CCDC40-202ENST00000374876 CFHR4Q92496 578 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 NAT8BQ9UHF3 227 aa12.24□□□□□ -0.45
CCDC40-202ENST00000374876 IGHV4-38-2P0DP08 117 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 GP9P14770 177 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 HES1Q14469 280 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 LEMD1Q68G75 181 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 VMO1Q7Z5L0 202 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 CMTM2Q8TAZ6 248 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 A0A1W2PRD5 423 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 A0A1W2PRF3 423 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 A0A1W2PRM7 423 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 ODF3BA8MYP8 253 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 CD24P25063 80 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 RAB4BP61018 213 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 TMEM183BQ1AE95 376 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 FAM231DQ6ZW35 169 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 NPBQ8NG41 125 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 RPH3ALQ9UNE2 315 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 MXRA5Q9NR99 2828 aa12.23□□□□□ -0.45
CCDC40-202ENST00000374876 TRAV40A0A0B4J280 105 aa12.22□□□□□ -0.45
CCDC40-202ENST00000374876 GATCO43716 136 aaKnown RBP12.22□□□□□ -0.45
CCDC40-202ENST00000374876 NUPR1O60356 82 aa12.22□□□□□ -0.45
CCDC40-202ENST00000374876 CA1P00915 261 aaPredicted RBP12.22□□□□□ -0.45
CCDC40-202ENST00000374876 PRO1933Q9H354 126 aa12.22□□□□□ -0.45
CCDC40-202ENST00000374876 SOX21Q9Y651 276 aaPredicted RBP12.22□□□□□ -0.45
CCDC40-202ENST00000374876 NDUFA3O95167 84 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 AMY1AP04745 511 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 HOXB4P17483 251 aaPredicted RBP12.21□□□□□ -0.45
CCDC40-202ENST00000374876 DEFA6Q01524 100 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 FAM209BQ5JX69 171 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 PRR27Q6MZM9 219 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 MRPL54Q6P161 138 aaKnown RBP12.21□□□□□ -0.45
CCDC40-202ENST00000374876 TMEM136Q6ZRR5 245 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 BAGE3Q86Y29 109 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 NF1P21359 2839 aa12.21□□□□□ -0.45
CCDC40-202ENST00000374876 CENPVL3A0A0U1RRI6 287 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 IZUMO1RA6ND01 250 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 FSHBP01225 129 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 IQCJQ1A5X6 159 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 ASPHD1Q5U4P2 390 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 BRD3OSQ6XYD6 125 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 ZNF600Q6ZNG1 722 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 KIR3DL3Q8N743 410 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 C5orf17Q8NAS9 161 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 NUDT10Q8NFP7 164 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 NUDT11Q96G61 164 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 ATG101Q9BSB4 218 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 FAM103A1Q9BTL3 118 aaKnown RBP12.21□□□□□ -0.46
CCDC40-202ENST00000374876 CHRDL1Q9BU40 450 aa12.21□□□□□ -0.46
CCDC40-202ENST00000374876 SLC25A39Q9BZJ4 359 aaPredicted RBP12.21□□□□□ -0.46
CCDC40-202ENST00000374876 H3BTX0 84 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 K7EIM0 57 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 C5orf64Q2M2E5 130 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 CCDC144NLQ6NUI1 221 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 C1orf122Q6ZSJ8 110 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 BCL6BQ8N143 479 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-202ENST00000374876 SMIM12Q96EX1 92 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 GRAMD2BQ96HH9 432 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 SGK494Q96LW2 274 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 MS4A10Q96PG2 267 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 Q9H3A6 140 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 TP53TG3Q9ULZ0 132 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 KLF12Q9Y4X4 402 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 SERF1AO75920 110 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 IGKV1-17P01599 117 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 HIST1H1EP10412 219 aaKnown RBP12.2□□□□□ -0.46
CCDC40-202ENST00000374876 TPPP2P59282 170 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 Q0VG73 95 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 USF2Q15853 346 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-202ENST00000374876 FMC1Q96HJ9 113 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 GPR82Q96P67 336 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 RBM14Q96PK6 669 aaKnown RBP12.2□□□□□ -0.46
CCDC40-202ENST00000374876 ZNF331Q9NQX6 463 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-202ENST00000374876 TMEM14CQ9P0S9 112 aa12.2□□□□□ -0.46
CCDC40-202ENST00000374876 SCGB1D1O95968 90 aa12.19□□□□□ -0.46
CCDC40-202ENST00000374876 HLA-DQA1P01909 254 aa12.19□□□□□ -0.46
CCDC40-202ENST00000374876 DDTP30046 118 aa12.19□□□□□ -0.46
CCDC40-202ENST00000374876 PAFAH1B2P68402 229 aa12.19□□□□□ -0.46
CCDC40-202ENST00000374876 JMJD1CQ15652 2540 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms