RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ZNF138P52744 262 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 SNRPCP09234 159 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 PYYP10082 97 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 CUL9Q8IWT3 2517 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 SLX1AQ9BQ83 275 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 GAGE12BA1L429 117 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 LINC01545Q5VT33 79 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 SPRR3Q9UBC9 169 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 ZNF815PA8K554 130 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 RFNGQ9Y644 331 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 ATXN7O15265 892 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 C3orf79P0CE67 100 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 Q86TA4 180 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 MDS2Q8NDY4 140 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 DPH3P1Q9H4G8 78 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV1-46P01743 117 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 WFDC3Q8IUB2 231 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 LRP4O75096 1905 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 D6R8Y8 96 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 MBD3L4A6NDZ8 208 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 MBD3L3A6NE82 208 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 MBD3L5A6NJ08 208 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 RNASE4P34096 147 aaKnown RBP8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 CFHR2P36980 270 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 MBD3L2Q8NHZ7 208 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 TRAV8-2A0A0B4J237 113 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 TMEM178BH3BS89 294 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 VCYO14598 125 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 FAM168AQ92567 244 aa8.43□□□□□ -1.06
CCDC88A-202ENST00000336838 PAX8Q06710 450 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 GUSBP1Q15486 140 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 FNDC4Q9H6D8 234 aaPredicted RBP8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHG3P01860 377 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 PSG1P11464 419 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 NDUFS8O00217 210 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 SLC25A20O43772 301 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 SLC25A15Q9Y619 301 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 SHANK2-AS3Q9BTD1 123 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 F8W1H4 67 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 H3BTX0 84 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 HAX1O00165 279 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 PSPNO60542 156 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 GCSAMLQ5JQS6 135 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 TEX43Q6ZNM6 134 aa8.42□□□□□ -1.06
CCDC88A-202ENST00000336838 PRSS46E5RG02 174 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 IL15RAQ13261 267 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 DCTN5Q9BTE1 182 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 TRAV8-4A0A0B4J246 113 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 NTF4P34130 210 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 TAL2Q16559 108 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 TMEM86BQ8N661 226 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 DUX3Q96PT4 197 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 LIME1Q9H400 295 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 ERG28Q9UKR5 140 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 C5orf64Q2M2E5 130 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 RNASE2P10153 161 aaKnown RBP8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 VWC2Q2TAL6 325 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 ZNF474Q6S9Z5 364 aaPredicted RBP8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 TMEM141Q96I45 108 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV1-3A0A0C4DH29 117 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 LINC00473A8K010 186 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV3-48P01763 117 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 LINC00311Q8N616 119 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 SMAD7O15105 426 aaKnown RBP8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 ST6GALNAC6Q969X2 333 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 HGFACQ04756 655 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 TMEM155Q4W5P6 130 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 TMEM256Q8N2U0 113 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 KIR3DL3Q8N743 410 aa8.41□□□□□ -1.06
CCDC88A-202ENST00000336838 M0R2P5 195 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 GATA2P23769 480 aaPredicted RBP8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 MEGF9Q9H1U4 602 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV1-24A0A0C4DH33 117 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 PAX2Q02962 417 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 C9orf172C9J069 976 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 CD177Q8N6Q3 437 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 OR11H6Q8NGC7 330 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 CD7P09564 240 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 GAGE2BQ13066 116 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 KIR3DS1Q14943 382 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 GAGE2EQ4V326 116 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 C20orf204Q6ZNR8 217 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 DTX2Q86UW9 622 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 GAGE2DQ9UEU5 116 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 SIGLEC9Q9Y336 463 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 CLEC19AQ6UXS0 136 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 C18orf32Q8TCD1 76 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 NDUFA4L2Q9NRX3 87 aa8.4□□□□□ -1.06
CCDC88A-202ENST00000336838 THBDP07204 575 aa8.4□□□□□ -1.07
CCDC88A-202ENST00000336838 C15orf32Q32M92 178 aa8.4□□□□□ -1.07
CCDC88A-202ENST00000336838 TMEM200BQ69YZ2 307 aa8.4□□□□□ -1.07
CCDC88A-202ENST00000336838 BUB1B-PAK6H3BSN5 160 aa8.4□□□□□ -1.07
CCDC88A-202ENST00000336838 MLNRO43193 412 aa8.4□□□□□ -1.07
CCDC88A-202ENST00000336838 ST6GALNAC3Q8NDV1 305 aa8.4□□□□□ -1.07
CCDC88A-202ENST00000336838 PMS2P5A8MQ11 134 aa8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 ZNF833PQ6ZTB9 187 aa8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 BEX4Q9NWD9 120 aaPredicted RBP8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 POLR3KQ9Y2Y1 108 aaPredicted RBP8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 POU2AF1Q16633 256 aa8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 FAM27E3Q08E93 113 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms