RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 PPP1R27Q86WC6 154 aa15.15■□□□□ 0.02
RTN4-201ENST00000317610 A0A1B0GW15 77 aa15.15■□□□□ 0.02
RTN4-201ENST00000317610 RIGQ13278 110 aa15.15■□□□□ 0.02
RTN4-201ENST00000317610 PRSS33Q8NF86 280 aa15.15■□□□□ 0.02
RTN4-201ENST00000317610 ZC2HC1AQ96GY0 325 aa15.15■□□□□ 0.02
RTN4-201ENST00000317610 A0A0G2JNJ9 132 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 VAMP3Q15836 100 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 RNASE6Q93091 150 aaKnown RBP15.14■□□□□ 0.01
RTN4-201ENST00000317610 Q9UFV3 132 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 TRBV19A0A075B6N1 114 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 IGHV1-3A0A0C4DH29 117 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 ARMS2P0C7Q2 107 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 NGBQ9NPG2 151 aa15.14■□□□□ 0.01
RTN4-201ENST00000317610 IGKV1-17P01599 117 aa15.13■□□□□ 0.01
RTN4-201ENST00000317610 HIST1H1AQ02539 215 aaPredicted RBP15.13■□□□□ 0.01
RTN4-201ENST00000317610 SRSF12Q8WXF0 261 aaKnown RBP15.13■□□□□ 0.01
RTN4-201ENST00000317610 RASL11BQ9BPW5 248 aa15.13■□□□□ 0.01
RTN4-201ENST00000317610 SHANK2-AS3Q9BTD1 123 aa15.13■□□□□ 0.01
RTN4-201ENST00000317610 RNF24Q9Y225 148 aa15.13■□□□□ 0.01
RTN4-201ENST00000317610 CUL9Q8IWT3 2517 aa15.13■□□□□ 0.01
RTN4-201ENST00000317610 MUC21A0A0G2JKD1 596 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 MUC21A0A140T8X8 626 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 MUC21Q5SSG8 566 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 ZNF747Q9BV97 191 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 SCNM1Q9BWG6 230 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 AP5S1Q9NUS5 200 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 LYPD1Q8N2G4 141 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 SRSF8Q9BRL6 282 aaKnown RBP15.12■□□□□ 0.01
RTN4-201ENST00000317610 INSIG2Q9Y5U4 225 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 MALRD1Q5VYJ5 2156 aa15.12■□□□□ 0.01
RTN4-201ENST00000317610 H3BRN7 92 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 K7EM74 188 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 Q6AWC8 147 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 SIGLEC15Q6ZMC9 328 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 MCRIP2Q9BUT9 160 aaKnown RBP15.11■□□□□ 0.01
RTN4-201ENST00000317610 BUB1B-PAK6H3BSN5 160 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 CD5LO43866 347 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 CSN3P07498 182 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 PMCHL2Q9BQD1 86 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 PSG8Q9UQ74 426 aa15.11■□□□□ 0.01
RTN4-201ENST00000317610 VSTM5A8MXK1 200 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 TOX4O94842 621 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 COX8AP10176 69 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 BPIFA4PQ86YQ2 179 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 FBXL15Q9H469 300 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 RBP4P02753 201 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 PSG3Q16557 428 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 ZNF493Q6ZR52 646 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 JKAMPQ9P055 326 aa15.1■□□□□ 0.01
RTN4-201ENST00000317610 K7EQM0 130 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 MRPS12O15235 138 aaKnown RBP15.09■□□□□ 0.01
RTN4-201ENST00000317610 CRIP1P50238 77 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 C17orf77Q96MU5 243 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 RNF5Q99942 180 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 BDP1A6H8Y1 2624 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 OR2T8A6NH00 312 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 K7EIM0 57 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 CSN1S1P47710 185 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 ARF6P62330 175 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 C2orf91Q6ZV80 131 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 OR10AG1Q8NH19 301 aa15.09■□□□□ 0.01
RTN4-201ENST00000317610 CFAP47Q6ZTR5 3102 aa15.08■□□□□ 0.01
RTN4-201ENST00000317610 GPR183P32249 361 aa15.08■□□□□ 0
RTN4-201ENST00000317610 DLX1P56177 255 aa15.08■□□□□ 0
RTN4-201ENST00000317610 FA2HQ7L5A8 372 aa15.08■□□□□ 0
RTN4-201ENST00000317610 DPF1Q92782 380 aa15.08■□□□□ 0
RTN4-201ENST00000317610 DYNLRB1Q9NP97 96 aa15.08■□□□□ 0
RTN4-201ENST00000317610 RALYQ9UKM9 306 aaKnown RBP15.08■□□□□ 0
RTN4-201ENST00000317610 A0A087X0K7 114 aa15.08■□□□□ 0
RTN4-201ENST00000317610 H0Y8G0 127 aa15.08■□□□□ 0
RTN4-201ENST00000317610 ANKRD39Q53RE8 183 aa15.08■□□□□ 0
RTN4-201ENST00000317610 SAPCD1Q5SSQ6 148 aa15.07■□□□□ 0
RTN4-201ENST00000317610 ERASQ7Z444 233 aa15.07■□□□□ 0
RTN4-201ENST00000317610 U3KQK5 164 aa15.07■□□□□ 0
RTN4-201ENST00000317610 SHISA9B4DS77 424 aa15.06■□□□□ 0
RTN4-201ENST00000317610 NCR2O95944 276 aa15.06■□□□□ 0
RTN4-201ENST00000317610 ZNF491Q8N8L2 437 aa15.06■□□□□ 0
RTN4-201ENST00000317610 PRSS3P2Q8NHM4 247 aa15.06■□□□□ 0
RTN4-201ENST00000317610 ZNF414Q96IQ9 312 aa15.06■□□□□ 0
RTN4-201ENST00000317610 A0A096LNJ9 63 aa15.06■□□□□ 0
RTN4-201ENST00000317610 ASPMQ8IZT6 3477 aa15.06■□□□□ 0
RTN4-201ENST00000317610 E7EQL1 145 aa15.05■□□□□ 0
RTN4-201ENST00000317610 LY6LH3BQJ8 138 aa15.05■□□□□ 0
RTN4-201ENST00000317610 PRRG2O14669 202 aa15.05■□□□□ 0
RTN4-201ENST00000317610 PPBPP02775 128 aa15.05■□□□□ 0
RTN4-201ENST00000317610 PRB3Q04118 309 aaPredicted RBP15.05■□□□□ -0
RTN4-201ENST00000317610 RPEQ96AT9 228 aa15.05■□□□□ -0
RTN4-201ENST00000317610 RNF125Q96EQ8 232 aa15.05■□□□□ -0
RTN4-201ENST00000317610 ASCL2Q99929 193 aa15.05■□□□□ -0
RTN4-201ENST00000317610 ROS1P08922 2347 aa15.04■□□□□ -0
RTN4-201ENST00000317610 WI2-2373I1.2A0A1W2PRP0 233 aa15.04■□□□□ -0
RTN4-201ENST00000317610 CBY3A6NI87 242 aa15.04■□□□□ -0
RTN4-201ENST00000317610 AMMECR1LQ6DCA0 310 aa15.04■□□□□ -0
RTN4-201ENST00000317610 SMG1Q96Q15 3661 aaKnown RBP15.04■□□□□ -0
RTN4-201ENST00000317610 FGF6P10767 208 aa15.04■□□□□ -0
RTN4-201ENST00000317610 PSG9Q00887 426 aa15.04■□□□□ -0
RTN4-201ENST00000317610 APOBEC3AP31941 199 aaPredicted RBP15.03■□□□□ -0
RTN4-201ENST00000317610 IFI27P40305 119 aaPredicted RBP15.03■□□□□ -0
RTN4-201ENST00000317610 PDE6HQ13956 83 aa15.03■□□□□ -0
RTN4-201ENST00000317610 CST9LQ9H4G1 147 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms