RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SMKR1H3BMG3 65 aa14.17□□□□□ -0.14
SYNPO-201ENST00000307662 TMEM200BQ69YZ2 307 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 NTN3O00634 580 aaPredicted RBP14.16□□□□□ -0.14
SYNPO-201ENST00000307662 VCYO14598 125 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 TMEM249Q2WGJ8 235 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 ZNF562Q6V9R5 426 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 Q8TAT8 98 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 C9orf118A6NHY6 69 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 RNASE2P10153 161 aaKnown RBP14.16□□□□□ -0.14
SYNPO-201ENST00000307662 C20orf204Q6ZNR8 217 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 LINC00479Q96M42 142 aa14.16□□□□□ -0.14
SYNPO-201ENST00000307662 PF4P02776 101 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 IGHV1-8P0DP01 117 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 LINC00158P58513 81 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 RALGAPA1Q6GYQ0 2036 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 RNF5Q99942 180 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 IGHV1-3A0A0C4DH29 117 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 ITGB1BP1O14713 200 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 YPEL3P61236 119 aaPredicted RBP14.15□□□□□ -0.14
SYNPO-201ENST00000307662 FOXL2NBQ6ZUU3 175 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 C7orf69Q9H7B7 122 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 ADARB2-AS1A8MUL3 147 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 HIST1H4AP62805 103 aaKnown RBP14.15□□□□□ -0.14
SYNPO-201ENST00000307662 ZNF492Q9P255 531 aa14.15□□□□□ -0.14
SYNPO-201ENST00000307662 TP53BP1Q12888 1972 aaPredicted RBP14.15□□□□□ -0.15
SYNPO-201ENST00000307662 LINC00205P59089 165 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 C1orf122Q6ZSJ8 110 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 C15orf32Q32M92 178 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 ZNF876PQ49A33 203 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 TEX43Q6ZNM6 134 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 STHQ8IWL8 128 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 CSTL1Q9H114 145 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 SPANXA1Q9NS26 97 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 MPDZO75970 2070 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 SDK2Q58EX2 2172 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 DPH3Q96FX2 82 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 CACNA1EQ15878 2313 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 CRPP02741 224 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 FAM168AQ92567 244 aa14.14□□□□□ -0.15
SYNPO-201ENST00000307662 C9JAW5 83 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 ARMS2P0C7Q2 107 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 WFDC12Q8WWY7 111 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 ZNF726P1Q15940 193 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 TMEM105Q8N8V8 129 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 LYNX1G3V0Z9 82 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 IL18BPO95998 194 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 LYNX1P0DP58 116 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 PHLDA1Q8WV24 401 aaPredicted RBP14.13□□□□□ -0.15
SYNPO-201ENST00000307662 PAX9P55771 341 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 ZNF474Q6S9Z5 364 aaPredicted RBP14.13□□□□□ -0.15
SYNPO-201ENST00000307662 GATD1Q8NB37 220 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 EDA2RQ9HAV5 297 aa14.13□□□□□ -0.15
SYNPO-201ENST00000307662 TRAV40A0A0B4J280 105 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 C9orf139Q6ZV77 190 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 SCN5AQ14524 2016 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 MMP23AO75900 390 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 CT83Q5H943 113 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 RNASE6Q93091 150 aaKnown RBP14.12□□□□□ -0.15
SYNPO-201ENST00000307662 RLFQ13129 1914 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 KLF12Q9Y4X4 402 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 IGKV1-6A0A0C4DH72 117 aa14.12□□□□□ -0.15
SYNPO-201ENST00000307662 ARTNQ5T4W7 220 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 CYYR1Q96J86 154 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 TRAV8-3A0A0A6YYJ7 113 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 MLANAQ16655 118 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 C14orf178Q8N769 122 aaPredicted RBP14.11□□□□□ -0.15
SYNPO-201ENST00000307662 LINC00477Q96M19 166 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 TRAV41A0A0B4J266 112 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 SRD5A1P18405 259 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 S100A7L2Q5SY68 101 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 RASL10AQ92737 203 aa14.11□□□□□ -0.15
SYNPO-201ENST00000307662 TSSC4Q9Y5U2 329 aaPredicted RBP14.11□□□□□ -0.15
SYNPO-201ENST00000307662 K7EP34 96 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 ABHD17AQ96GS6 310 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 OVOL2Q9BRP0 275 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 PLSCR4Q9NRQ2 329 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 CACNA1DQ01668 2161 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 K7EP13 123 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 TRPM7Q96QT4 1865 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 DEFB104AQ8WTQ1 72 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.1□□□□□ -0.15
SYNPO-201ENST00000307662 E9PLN8 166 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 IGLL1P15814 213 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 ESPL1Q14674 2120 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 GAFA1Q96PS6 74 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 V9GYV3 84 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 TRGV4A0A0C4DH28 118 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 THBDP07204 575 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 LCNL1Q6ZST4 164 aa14.1□□□□□ -0.15
SYNPO-201ENST00000307662 ZSWIM8A7E2V4 1837 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 WNT2P09544 360 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 VDAC2P45880 294 aaPredicted RBP14.09□□□□□ -0.15
SYNPO-201ENST00000307662 IGKV1D-17A0A075B6S4 117 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 SRRM4A7MD48 611 aaKnown RBP14.09□□□□□ -0.15
SYNPO-201ENST00000307662 SIGLEC9Q9Y336 463 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 TMEM75Q8N9X5 138 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 F8W1H4 67 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 COX8AP10176 69 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 CHCHD5Q9BSY4 110 aa14.09□□□□□ -0.15
SYNPO-201ENST00000307662 SHANK2-AS3Q9BTD1 123 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms