RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 USMG5Q96IX5 58 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 SRSF8Q9BRL6 282 aaKnown RBP12.97□□□□□ -0.33
USP42-201ENST00000306177 BPESC1Q9GZL8 116 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 NSUN5P1Q3KNT7 163 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 RPRMLQ8N4K4 120 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 HIST1H2BLQ99880 126 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 IGKV1-6A0A0C4DH72 117 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 TOMM40O96008 361 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 PRB4P10163 310 aaPredicted RBP12.97□□□□□ -0.33
USP42-201ENST00000306177 ZNF138P52744 262 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 GTSCR1Q86UQ5 136 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 LYPD1Q8N2G4 141 aa12.97□□□□□ -0.33
USP42-201ENST00000306177 TRGV4A0A0C4DH28 118 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 SLC25A16P16260 332 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 GFI1BQ5VTD9 330 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 DTX1Q86Y01 620 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 LINC01549A6NIU2 74 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 FAM223BA6NKX1 122 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 FAM223AQ8IWN6 122 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 LRRK1Q38SD2 2015 aa12.96□□□□□ -0.33
USP42-201ENST00000306177 GATA4P43694 442 aa12.96□□□□□ -0.34
USP42-201ENST00000306177 Q8TCH9 128 aa12.96□□□□□ -0.34
USP42-201ENST00000306177 IFI27L1Q96BM0 104 aa12.95□□□□□ -0.34
USP42-201ENST00000306177 NDUFAF3Q9BU61 184 aa12.95□□□□□ -0.34
USP42-201ENST00000306177 CHTOPQ9Y3Y2 248 aaKnown RBP12.95□□□□□ -0.34
USP42-201ENST00000306177 HIST3H2BBQ8N257 126 aa12.95□□□□□ -0.34
USP42-201ENST00000306177 SPCS1Q9Y6A9 102 aa12.95□□□□□ -0.34
USP42-201ENST00000306177 PSG3Q16557 428 aa12.95□□□□□ -0.34
USP42-201ENST00000306177 BEND2Q8NDZ0 799 aa12.95□□□□□ -0.34
USP42-201ENST00000306177 CD28P10747 220 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 SAA4P35542 130 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 IGKCP01834 107 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 NDPQ00604 133 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 LYZL1Q6UWQ5 148 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 ANAPC10Q9UM13 185 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 ZFHX2Q9C0A1 2572 aaPredicted RBP12.94□□□□□ -0.34
USP42-201ENST00000306177 SAP30O75446 220 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 LINC00477Q96M19 166 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 C1orf147Q96MC9 270 aaPredicted RBP12.94□□□□□ -0.34
USP42-201ENST00000306177 E9PQ18 207 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 CADP27708 2225 aa12.94□□□□□ -0.34
USP42-201ENST00000306177 A0A1B0GWB2 263 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 NDUFS8O00217 210 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 TNFSF13O75888 250 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 LINC01559Q495D7 138 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 C5orf30Q96GV9 206 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 IGKV3D-20A0A0C4DH25 116 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 MALP21145 153 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 LAGE3Q14657 143 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 LCN12Q6JVE5 192 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 LINC01356Q8N9X3 169 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 D6R8Y8 96 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 ZNF688P0C7X2 276 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 BDP1A6H8Y1 2624 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 TRBV7-9A0A0J9YWB2 115 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 RBMY1BA6NDE4 496 aaKnown RBP12.93□□□□□ -0.34
USP42-201ENST00000306177 RBMY1EA6NEQ0 496 aaKnown RBP12.93□□□□□ -0.34
USP42-201ENST00000306177 SRRM4A7MD48 611 aaKnown RBP12.93□□□□□ -0.34
USP42-201ENST00000306177 SH2D1AO60880 128 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 RBMY1DP0C7P1 496 aaKnown RBP12.93□□□□□ -0.34
USP42-201ENST00000306177 RBMY1A1P0DJD3 496 aaKnown RBP12.93□□□□□ -0.34
USP42-201ENST00000306177 RBMY1CP0DJD4 496 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 NCOR1P1Q9H4R4 102 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 SELENOKQ9Y6D0 94 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 ABCA1O95477 2261 aa12.93□□□□□ -0.34
USP42-201ENST00000306177 A0A1B0GV72 72 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 A0A1W2PPI3 338 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 CEACAM8P31997 349 aaPredicted RBP12.92□□□□□ -0.34
USP42-201ENST00000306177 Q6ZR03 302 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 RNF182Q8N6D2 247 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 SMPXQ9UHP9 88 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 AMBPP02760 352 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 MLANAQ16655 118 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 NUP35Q8NFH5 326 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 KIAA1671Q9BY89 1806 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 CREBBPQ92793 2442 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 NCR2O95944 276 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 ACTL10Q5JWF8 245 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 Q8TAT8 98 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 RCHY1Q96PM5 261 aa12.92□□□□□ -0.34
USP42-201ENST00000306177 PCNX2A6NKB5 2137 aa12.91□□□□□ -0.34
USP42-201ENST00000306177 ZNF329Q86UD4 541 aa12.91□□□□□ -0.34
USP42-201ENST00000306177 H3BUT2 72 aa12.91□□□□□ -0.34
USP42-201ENST00000306177 ZNF562Q6V9R5 426 aa12.91□□□□□ -0.34
USP42-201ENST00000306177 NHP2Q9NX24 153 aaKnown RBP12.91□□□□□ -0.34
USP42-201ENST00000306177 UBE2E1P51965 193 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 SHANK2-AS3Q9BTD1 123 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 ZNF503-AS2A6NEH8 195 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 PIP4P1Q86T03 277 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 SLC25A2Q9BXI2 301 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 TMEM14BQ9NUH8 114 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 ZNRD1Q9P1U0 126 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 NUP210Q8TEM1 1887 aaPredicted RBP12.9□□□□□ -0.34
USP42-201ENST00000306177 TMEM8BA6NDV4 472 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 FCN3O75636 299 aa12.9□□□□□ -0.34
USP42-201ENST00000306177 TRAV8-1A0A0A6YYK1 113 aa12.9□□□□□ -0.35
USP42-201ENST00000306177 RHPN1-AS1Q9BWJ2 59 aa12.9□□□□□ -0.35
USP42-201ENST00000306177 ZNF815PA8K554 130 aa12.89□□□□□ -0.35
USP42-201ENST00000306177 TYMSP04818 313 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms