RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 RTBDNQ9BSG5 229 aaPredicted RBP9.39□□□□□ -0.91
PTPN4-201ENST00000263708 TM2D1Q9BX74 207 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 ZMAT4Q9H898 229 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 RPUSD1Q9UJJ7 312 aaKnown RBP9.39□□□□□ -0.91
PTPN4-201ENST00000263708 hDV102S1A0JD36 115 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 ZNF138P52744 262 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 BAALCQ8WXS3 180 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 OSTCQ9NRP0 149 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 TNFSF13O75888 250 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 CLPSL2Q6UWE3 100 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 WFDC6Q9BQY6 131 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 PLAC1Q9HBJ0 212 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 E9PQ18 207 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 CRLF1O75462 422 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 SMIM2Q9BVW6 85 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 UBL5Q9BZL1 73 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 RALGAPA2Q2PPJ7 1873 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 OCC1Q8TAD7 63 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 TET1Q8NFU7 2136 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 HELZP42694 1942 aaKnown RBP9.38□□□□□ -0.91
PTPN4-201ENST00000263708 TCF15Q12870 199 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 CHAC1Q9BUX1 264 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 TRBV25-1A0A075B6N4 114 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 SMKR1H3BMG3 65 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 PLPPR1Q8TBJ4 325 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 RMI2Q96E14 147 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 KLF17Q5JT82 389 aaPredicted RBP9.38□□□□□ -0.91
PTPN4-201ENST00000263708 PLSCR4Q9NRQ2 329 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 NYNRINQ9P2P1 1898 aaKnown RBP9.38□□□□□ -0.91
PTPN4-201ENST00000263708 TRBV5-3A0A0A0MS03 114 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 IGHG4P01861 327 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 C18orf12Q96KH6 178 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 TMEM158Q8WZ71 300 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 PIN1P1O15428 100 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 GZMMP51124 257 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 TPTE2P1Q5T6R2 138 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 SUPT4H1P63272 117 aaKnown RBP9.38□□□□□ -0.91
PTPN4-201ENST00000263708 LCN12Q6JVE5 192 aa9.38□□□□□ -0.91
PTPN4-201ENST00000263708 IGFL4Q6B9Z1 124 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 TRACP01848 142 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 TEX48A0A1B0GUV7 120 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 GAGE12JA6NER3 117 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 PSPNO60542 156 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 GAGE1Q13065 139 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 GAGE4Q13068 117 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 GAGE5Q13069 117 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 DKK1O94907 266 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 NXPH4O95158 308 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 PSG3Q16557 428 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 LINC01559Q495D7 138 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 B4DSR2 109 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 TMEM258P61165 79 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 TMEM256Q8N2U0 113 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 FAM181AQ8N9Y4 354 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 LY6G5BQ8NDX9 201 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 SPACA3Q8IXA5 215 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 LINC00477Q96M19 166 aa9.37□□□□□ -0.91
PTPN4-201ENST00000263708 GAS1P54826 345 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 MAJINQ3KP22 176 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 NABP1Q96AH0 204 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 XCL2Q9UBD3 114 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 VWC2Q2TAL6 325 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 GNLYP22749 145 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 SLC25A48Q6ZT89 311 aaKnown RBP9.36□□□□□ -0.91
PTPN4-201ENST00000263708 A0A096LPF7 62 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 FOXG1P55316 489 aaPredicted RBP9.36□□□□□ -0.91
PTPN4-201ENST00000263708 SYNJ2BPP57105 145 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 KIR3DS1Q14943 382 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 C4orf51C9J302 202 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 LINC01356Q8N9X3 169 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 COL24A1Q17RW2 1714 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 PRSS29PA6NIE9 313 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 APOC4P55056 127 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 A0A1W2PPI3 338 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 NBL1P41271 181 aa9.36□□□□□ -0.91
PTPN4-201ENST00000263708 ADAMTSL5Q6ZMM2 481 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 MBD3L4A6NDZ8 208 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-201ENST00000263708 MBD3L3A6NE82 208 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-201ENST00000263708 MBD3L5A6NJ08 208 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-201ENST00000263708 TMEM200BQ69YZ2 307 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 MBD3L2Q8NHZ7 208 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-201ENST00000263708 IGHV1-18A0A0C4DH31 117 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 BMPERQ8N8U9 685 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 NEUROG3Q9Y4Z2 214 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 AZU1P20160 251 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 ZNF672Q499Z4 452 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-201ENST00000263708 EPOPA6NHQ4 379 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 FAM223BA6NKX1 122 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 FAM223AQ8IWN6 122 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 ZNF837Q96EG3 531 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-201ENST00000263708 GAGE6Q13070 117 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 USMG5Q96IX5 58 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 ROS1P08922 2347 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 KNCNA6PVL3 124 aa9.35□□□□□ -0.91
PTPN4-201ENST00000263708 IGHV1-3A0A0C4DH29 117 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 IFITM3Q01628 133 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 MORN5Q5VZ52 161 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 C20orf204Q6ZNR8 217 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 SPRR3Q9UBC9 169 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 CARHSP1Q9Y2V2 147 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms