RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 NOTCH3Q9UM47 2321 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 SYNJ2BPP57105 145 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 C14orf178Q8N769 122 aaPredicted RBP15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 NXT2Q9NPJ8 142 aaKnown RBP15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 MBD3L4A6NDZ8 208 aaPredicted RBP15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 MBD3L3A6NE82 208 aaPredicted RBP15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 MBD3L5A6NJ08 208 aaPredicted RBP15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 C19orf67A6NJJ6 358 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 FGF16O43320 207 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 SH2D1AO60880 128 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 NMSQ5H8A3 153 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 MBD3L2Q8NHZ7 208 aaPredicted RBP15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 MBD3L1Q8WWY6 194 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 PCP4P48539 62 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 LINC00479Q96M42 142 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 LOC105371267A0A1B0GV96 52 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 FAM90A9PA6NNJ1 464 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 LCN12Q6JVE5 192 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 TDGF1P3P51864 188 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 DUX4L9Q6RFH8 374 aaPredicted RBP15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 Q6ZS92 163 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 GNB1LQ9BYB4 327 aa15.22■□□□□ 0.03
SMARCC1-201ENST00000254480 SLC25A20O43772 301 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 A6NNC1 897 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 OVOL3O00110 214 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 DSCR9P59020 149 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 ORMDL2Q53FV1 153 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 DEFB130BP0DP73 79 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 DEFB130AP0DP74 79 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 MPZP25189 248 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 CFHR3Q02985 330 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 ATP5L2Q7Z4Y8 100 aa15.21■□□□□ 0.03
SMARCC1-201ENST00000254480 DOCK9Q9BZ29 2069 aa15.21■□□□□ 0.02
SMARCC1-201ENST00000254480 Q6ZRM9 215 aa15.21■□□□□ 0.02
SMARCC1-201ENST00000254480 SBF1O95248 1867 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 F2Z2F3 143 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 LAGE3Q14657 143 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 SP5Q6BEB4 398 aaPredicted RBP15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 VWA8A3KMH1 1905 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 ZNF407Q9C0G0 2248 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 RHPN1-AS1Q9BWJ2 59 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 TRAV9-2A0A087WT02 112 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 LINC00477Q96M19 166 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 CLDN16Q9Y5I7 305 aa15.2■□□□□ 0.02
SMARCC1-201ENST00000254480 HOXA3O43365 443 aaPredicted RBP15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 MINOS1Q5TGZ0 78 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 MINOS1-NBL1R4GNA1 71 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 CKS1BP61024 79 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 PRADC1Q9BSG0 188 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 KNCNA6PVL3 124 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 S100A7L2Q5SY68 101 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 C1orf159Q96HA4 380 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 HIST1H2BLQ99880 126 aa15.19■□□□□ 0.02
SMARCC1-201ENST00000254480 LINC01551Q86U37 167 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 hDV102S1A0JD36 115 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 GATD1Q8NB37 220 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 TRGV9Q99603 122 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 C15orf62A8K5M9 175 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 TMEM256Q8N2U0 113 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 QRFPP83859 136 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 NUP35Q8NFH5 326 aa15.18■□□□□ 0.02
SMARCC1-201ENST00000254480 C5orf30Q96GV9 206 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 TMEM14EPQ6UXP3 125 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 TRBV7-1A0A0A6YYK4 115 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 PPBPP02775 128 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 TRAV13-1A0A0B4J241 112 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 CD5P06127 495 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 CST9LQ9H4G1 147 aa15.17■□□□□ 0.02
SMARCC1-201ENST00000254480 PTPRDP23468 1912 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 IL17RELQ6ZVW7 336 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 M0R1W7 72 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 PLNP26678 52 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 LINC01356Q8N9X3 169 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 CSTL1Q9H114 145 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 PCNX1Q96RV3 2341 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 IGHG3P01860 377 aa15.16■□□□□ 0.02
SMARCC1-201ENST00000254480 DKK1O94907 266 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 DEFB131AP59861 70 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 G3V318 75 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 PAX4O43316 350 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 PSG3Q16557 428 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 MSRB2Q9Y3D2 182 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 RNASE2P10153 161 aaKnown RBP15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 AMN1Q8IY45 258 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 IGHV3-16A0A0C4DH30 117 aa15.15■□□□□ 0.02
SMARCC1-201ENST00000254480 ATP6V0E1O15342 81 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 AMBPP02760 352 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 SPSB3Q6PJ21 355 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 Q96MF0 132 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 XCL2Q9UBD3 114 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 C3orf56Q8N813 242 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 A0A1W2PPI3 338 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 PSCAO43653 123 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 Q5PR19 223 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 DTX2Q86UW9 622 aa15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 CHCHD1Q96BP2 118 aaKnown RBP15.14■□□□□ 0.01
SMARCC1-201ENST00000254480 RPL36AP83881 106 aaKnown RBP15.13■□□□□ 0.01
SMARCC1-201ENST00000254480 RPL36ALQ969Q0 106 aaKnown RBP15.13■□□□□ 0.01
SMARCC1-201ENST00000254480 ORAOV1Q8WV07 137 aa15.13■□□□□ 0.01
SMARCC1-201ENST00000254480 GBF1Q92538 1859 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms