RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 DSCC1Q9BVC3 393 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 NRBP1Q9UHY1 535 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 NR1I2O75469 434 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 TOP1P11387 765 aaKnown RBP11.9□□□□□ -0.5
LIG1-220ENST00000601091 CCDC102BQ68D86 513 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 TTLL5Q6EMB2 1281 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 CCDC82Q8N4S0 544 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 UBXN4Q92575 508 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 PICK1Q9NRD5 415 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 CEP131Q9UPN4 1083 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 TESPA1A2RU30 521 aaPredicted RBP11.9□□□□□ -0.5
LIG1-220ENST00000601091 BRAPQ7Z569 592 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 PPFIBP1Q86W92 1011 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 CCDC144CPQ8IYA2 1237 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 CCDC150Q8NCX0 1101 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 MICAL1Q8TDZ2 1067 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 CCDC47Q96A33 483 aaKnown RBP11.9□□□□□ -0.5
LIG1-220ENST00000601091 MAF1Q9H063 256 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 IGHMBP2P38935 993 aaKnown RBP11.89□□□□□ -0.51
LIG1-220ENST00000601091 SNW1Q13573 536 aaKnown RBP11.89□□□□□ -0.51
LIG1-220ENST00000601091 C1QTNF12Q5T7M4 302 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 ZNF594Q96JF6 807 aaPredicted RBP11.89□□□□□ -0.51
LIG1-220ENST00000601091 IL25Q9H293 177 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 A0A1B0GVL5 298 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 ZBTB43O43298 467 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 A1BGP04217 495 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 NEFHP12036 1026 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.89□□□□□ -0.516e-6■□□□□ 8.9
LIG1-220ENST00000601091 SALL3Q9BXA9 1300 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 UQCRFS1P1P0C7P4 283 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 SLC5A1P13866 664 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 NOM1Q5C9Z4 860 aaKnown RBP11.89□□□□□ -0.51
LIG1-220ENST00000601091 ABCF2Q9UG63 623 aa11.89□□□□□ -0.51
LIG1-220ENST00000601091 E7EWF7 191 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 ZSCAN12O43309 604 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 PFKFB2O60825 505 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 CYP21A2P08686 494 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 MARCKSP29966 332 aaPredicted RBP11.88□□□□□ -0.51
LIG1-220ENST00000601091 GABPB1Q06547 395 aaPredicted RBP11.88□□□□□ -0.51
LIG1-220ENST00000601091 IRF5Q13568 498 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 TAX1BP1Q86VP1 789 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 CHCHD3Q9NX63 227 aaKnown RBP11.88□□□□□ -0.51
LIG1-220ENST00000601091 CWC15Q9P013 229 aaKnown RBP11.88□□□□□ -0.51
LIG1-220ENST00000601091 NUB1Q9Y5A7 615 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 ADCY9O60503 1353 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 SPATA31D1Q6ZQQ2 1576 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 NRKQ7Z2Y5 1582 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 ANKRD62A6NC57 917 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 TRIML1Q8N9V2 468 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 IGKV5-2P06315 115 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 GTF2F1P35269 517 aaKnown RBP eCLIP11.88□□□□□ -0.512e-10■■■■■ 37.3
LIG1-220ENST00000601091 ARMC3Q5W041 872 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 SMARCE1Q969G3 411 aa11.88□□□□□ -0.51
LIG1-220ENST00000601091 USP42Q9H9J4 1324 aaKnown RBP11.88□□□□□ -0.51
LIG1-220ENST00000601091 MINDY4BA8MYZ0 360 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 SLC26A6Q9BXS9 759 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 RNF41Q9H4P4 317 aaPredicted RBP11.87□□□□□ -0.51
LIG1-220ENST00000601091 IL2RBP14784 551 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 PTPN12Q05209 780 aaKnown RBP11.87□□□□□ -0.51
LIG1-220ENST00000601091 CCDC125Q86Z20 511 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 TTC30BQ8N4P2 665 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 APPBP2Q92624 585 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 ZNF274Q96GC6 653 aaPredicted RBP11.87□□□□□ -0.51
LIG1-220ENST00000601091 URI1O94763 535 aaPredicted RBP11.87□□□□□ -0.51
LIG1-220ENST00000601091 TXLNAP40222 546 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 UBASH3AP57075 661 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 MFSD6Q6ZSS7 791 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 RPUSD2Q8IZ73 545 aaKnown RBP11.87□□□□□ -0.51
LIG1-220ENST00000601091 FAM89AQ96GI7 184 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 PCMTD1Q96MG8 357 aaPredicted RBP11.87□□□□□ -0.51
LIG1-220ENST00000601091 PCDH11XQ9BZA7 1347 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 PCDH11YQ9BZA8 1340 aa11.87□□□□□ -0.51
LIG1-220ENST00000601091 KIF3CO14782 793 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 HSPD1P10809 573 aaKnown RBP11.86□□□□□ -0.51
LIG1-220ENST00000601091 LMOD1P29536 600 aaPredicted RBP11.86□□□□□ -0.51
LIG1-220ENST00000601091 KLHL23Q8NBE8 558 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 XAGE2Q96GT9 111 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 RABL2BQ9UNT1 228 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 SCRN1Q12765 414 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 TTC30AQ86WT1 665 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 USP28Q96RU2 1077 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 ADGRL3Q9HAR2 1447 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 PXDNLA1KZ92 1463 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 OTUD7BQ6GQQ9 843 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 TRIM74Q86UV6 250 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 TRIM73Q86UV7 250 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 IFNKQ9P0W0 207 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 G3BP2Q9UN86 482 aaKnown RBP11.86□□□□□ -0.51
LIG1-220ENST00000601091 CASQ1P31415 396 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 RAD51AP2Q09MP3 1159 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 JAKMIP3Q5VZ66 844 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 KIAA1524Q8TCG1 905 aa11.86□□□□□ -0.51
LIG1-220ENST00000601091 SETD1BQ9UPS6 1966 aaKnown RBP11.85□□□□□ -0.51
LIG1-220ENST00000601091 VIRMAQ69YN4 1812 aaKnown RBP11.85□□□□□ -0.51
LIG1-220ENST00000601091 SIGLEC1Q9BZZ2 1709 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 NCAPD2Q15021 1401 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 AP5Z1O43299 807 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 EPHA10Q5JZY3 1008 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 KLHL33A6NCF5 533 aa11.85□□□□□ -0.51
LIG1-220ENST00000601091 OATP04181 439 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms