RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 UBE4AQ14139 1066 aa20.56■□□□□ 0.88
CLK3-223ENST00000568488 TEKT1Q969V4 418 aa20.56■□□□□ 0.88
CLK3-223ENST00000568488 ZNF341Q9BYN7 854 aa20.56■□□□□ 0.88
CLK3-223ENST00000568488 GABRQQ9UN88 632 aa20.56■□□□□ 0.88
CLK3-223ENST00000568488 FRAT2O75474 233 aaPredicted RBP20.55■□□□□ 0.88
CLK3-223ENST00000568488 VPS37DQ86XT2 251 aa20.55■□□□□ 0.88
CLK3-223ENST00000568488 ADGRA2Q96PE1 1338 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 CUL9Q8IWT3 2517 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 ADCY3O60266 1144 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 HDLBPQ00341 1268 aaKnown RBP20.54■□□□□ 0.88
CLK3-223ENST00000568488 EPHA10Q5JZY3 1008 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 FAM83AQ86UY5 434 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 DEFB123Q8N688 67 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 DEFB118Q96PH6 123 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 A0A1B0GUL6 1792 aa20.54■□□□□ 0.88
CLK3-223ENST00000568488 CYP2C8P10632 490 aa20.53■□□□□ 0.88
CLK3-223ENST00000568488 Q7L0L9 218 aa20.53■□□□□ 0.88
CLK3-223ENST00000568488 PARK7Q99497 189 aaKnown RBP20.53■□□□□ 0.88
CLK3-223ENST00000568488 ELNP15502 786 aa20.52■□□□□ 0.88
CLK3-223ENST00000568488 PAWRQ96IZ0 340 aaKnown RBP20.52■□□□□ 0.88
CLK3-223ENST00000568488 LAMA3Q16787 3333 aa20.52■□□□□ 0.87
CLK3-223ENST00000568488 INHAP05111 366 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 BCRP11274 1271 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 FLT3LGP49771 235 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 DDX10Q13206 875 aaKnown RBP20.51■□□□□ 0.87
CLK3-223ENST00000568488 TBC1D22AQ8WUA7 517 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 ZDHHC15Q96MV8 337 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 TAOK2Q9UL54 1235 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 KCNH4Q9UQ05 1017 aa20.51■□□□□ 0.87
CLK3-223ENST00000568488 MOGSQ13724 837 aa20.5■□□□□ 0.87
CLK3-223ENST00000568488 FKBP1CQ5VVH2 108 aa20.5■□□□□ 0.87
CLK3-223ENST00000568488 APOBEC3HQ6NTF7 200 aaKnown RBP20.5■□□□□ 0.87
CLK3-223ENST00000568488 PUS3Q9BZE2 481 aaKnown RBP20.5■□□□□ 0.87
CLK3-223ENST00000568488 NECAB2Q7Z6G3 386 aa20.49■□□□□ 0.87
CLK3-223ENST00000568488 C7orf61Q8IZ16 206 aa20.49■□□□□ 0.87
CLK3-223ENST00000568488 ZMYND8Q9ULU4 1186 aaPredicted RBP20.49■□□□□ 0.87
CLK3-223ENST00000568488 STXBP5LQ9Y2K9 1186 aa20.49■□□□□ 0.87
CLK3-223ENST00000568488 F6X3S4 739 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 BMP8BP34820 402 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 CAVIN4Q5BKX8 364 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 GPAT2Q6NUI2 795 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 GPR153Q6NV75 609 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 FBXO33Q7Z6M2 555 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 GDF15Q99988 308 aa20.48■□□□□ 0.87
CLK3-223ENST00000568488 TNPO2O14787 897 aaKnown RBP20.47■□□□□ 0.87
CLK3-223ENST00000568488 CAPN2P17655 700 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 BCAMP50895 628 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 TCP10Q12799 353 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 BEND3Q5T5X7 828 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 PXYLP1Q8TE99 480 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 FAM151AQ8WW52 585 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 MRIQ9BWK5 157 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 ZNF112Q9UJU3 913 aa20.47■□□□□ 0.87
CLK3-223ENST00000568488 GRM8O00222 908 aa20.46■□□□□ 0.87
CLK3-223ENST00000568488 DIS3LQ8TF46 1054 aaKnown RBP20.46■□□□□ 0.87
CLK3-223ENST00000568488 COL25A1Q9BXS0 654 aaPredicted RBP20.46■□□□□ 0.87
CLK3-223ENST00000568488 C9orf78Q9NZ63 289 aaPredicted RBP20.46■□□□□ 0.87
CLK3-223ENST00000568488 CXCL11O14625 94 aa20.45■□□□□ 0.86
CLK3-223ENST00000568488 PAK6Q9NQU5 681 aaPredicted RBP20.45■□□□□ 0.86
CLK3-223ENST00000568488 MTMR10Q9NXD2 777 aa20.45■□□□□ 0.86
CLK3-223ENST00000568488 MAST3O60307 1309 aa20.45■□□□□ 0.86
CLK3-223ENST00000568488 RPAP1Q9BWH6 1393 aaPredicted RBP20.45■□□□□ 0.86
CLK3-223ENST00000568488 SYN1P17600 705 aa20.44■□□□□ 0.86
CLK3-223ENST00000568488 GADL1Q6ZQY3 521 aa20.44■□□□□ 0.86
CLK3-223ENST00000568488 FASTKD5Q7L8L6 764 aaKnown RBP20.44■□□□□ 0.86
CLK3-223ENST00000568488 CRISPLD2Q9H0B8 497 aa20.44■□□□□ 0.86
CLK3-223ENST00000568488 MROH5Q6ZUA9 1318 aa20.44■□□□□ 0.86
CLK3-223ENST00000568488 MGAMO43451 1857 aa20.43■□□□□ 0.86
CLK3-223ENST00000568488 IRF5Q13568 498 aa20.43■□□□□ 0.86
CLK3-223ENST00000568488 LRIT3Q3SXY7 679 aa20.43■□□□□ 0.86
CLK3-223ENST00000568488 METTL24Q5JXM2 366 aa20.43■□□□□ 0.86
CLK3-223ENST00000568488 NOL9Q5SY16 702 aaKnown RBP20.43■□□□□ 0.86
CLK3-223ENST00000568488 HHIPL2Q6UWX4 724 aa20.43■□□□□ 0.86
CLK3-223ENST00000568488 ZHX2Q9Y6X8 837 aa20.43■□□□□ 0.86
CLK3-223ENST00000568488 SMCR8Q8TEV9 937 aaPredicted RBP20.42■□□□□ 0.86
CLK3-223ENST00000568488 COA7Q96BR5 231 aa20.42■□□□□ 0.86
CLK3-223ENST00000568488 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLK3-223ENST00000568488 AK9Q5TCS8 1911 aa20.41■□□□□ 0.86
CLK3-223ENST00000568488 MAGEA10P43363 369 aaPredicted RBP20.41■□□□□ 0.86
CLK3-223ENST00000568488 TDHQ8IZJ6 230 aa20.41■□□□□ 0.86
CLK3-223ENST00000568488 PICK1Q9NRD5 415 aa20.41■□□□□ 0.86
CLK3-223ENST00000568488 SUGT1Q9Y2Z0 365 aa20.41■□□□□ 0.86
CLK3-223ENST00000568488 A0A0G2JLL6 359 aaPredicted RBP20.4■□□□□ 0.86
CLK3-223ENST00000568488 ZEB1P37275 1124 aaPredicted RBP20.4■□□□□ 0.86
CLK3-223ENST00000568488 NFIAQ12857 509 aa20.4■□□□□ 0.86
CLK3-223ENST00000568488 CDC42EP5Q6NZY7 148 aa20.4■□□□□ 0.86
CLK3-223ENST00000568488 PRRT2Q7Z6L0 340 aaPredicted RBP20.4■□□□□ 0.86
CLK3-223ENST00000568488 SUCLG2Q96I99 432 aa20.4■□□□□ 0.86
CLK3-223ENST00000568488 UBE2OQ9C0C9 1292 aaKnown RBP20.4■□□□□ 0.86
CLK3-223ENST00000568488 NBPF3Q9H094 633 aa20.4■□□□□ 0.86
CLK3-223ENST00000568488 UNC80Q8N2C7 3258 aa20.39■□□□□ 0.86
CLK3-223ENST00000568488 LRRC24Q50LG9 513 aa20.39■□□□□ 0.85
CLK3-223ENST00000568488 SLC4A10Q6U841 1118 aa20.39■□□□□ 0.85
CLK3-223ENST00000568488 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.39■□□□□ 0.85
CLK3-223ENST00000568488 WWC1Q8IX03 1113 aa20.39■□□□□ 0.85
CLK3-223ENST00000568488 ANKLE1Q8NAG6 615 aa20.39■□□□□ 0.85
CLK3-223ENST00000568488 ALPK3Q96L96 1907 aa20.39■□□□□ 0.85
CLK3-223ENST00000568488 VAMP4O75379 141 aa20.38■□□□□ 0.85
CLK3-223ENST00000568488 PDE8BO95263 885 aa20.38■□□□□ 0.85
CLK3-223ENST00000568488 ANKRD13CQ8N6S4 541 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms