RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RALYLQ86SE5 291 aaKnown RBP25.19■■□□□ 1.62
CLN3-209ENST00000561689 MXD3Q9BW11 206 aa25.19■■□□□ 1.62
CLN3-209ENST00000561689 CWC22Q9HCG8 908 aaKnown RBP25.19■■□□□ 1.62
CLN3-209ENST00000561689 KCNQ5Q9NR82 932 aa25.19■■□□□ 1.62
CLN3-209ENST00000561689 SNED1Q8TER0 1413 aa25.18■■□□□ 1.62
CLN3-209ENST00000561689 AOC3Q16853 763 aa25.18■■□□□ 1.62
CLN3-209ENST00000561689 NECAB1Q8N987 351 aa25.18■■□□□ 1.62
CLN3-209ENST00000561689 BRF1Q92994 677 aa25.18■■□□□ 1.62
CLN3-209ENST00000561689 CRNKL1Q9BZJ0 848 aaKnown RBP25.18■■□□□ 1.62
CLN3-209ENST00000561689 SH2B1Q9NRF2 756 aaPredicted RBP25.18■■□□□ 1.62
CLN3-209ENST00000561689 MB21D2Q8IYB1 491 aaPredicted RBP25.18■■□□□ 1.62
CLN3-209ENST00000561689 LDHCP07864 332 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 TGFB2P61812 414 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 TRDNQ13061 729 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 PODNQ7Z5L7 613 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 CCDC83Q8IWF9 413 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 STK11IPQ8N1F8 1099 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 CERS5Q8N5B7 392 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 NKX2-3Q8TAU0 364 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 MAST2Q6P0Q8 1798 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 MROH7-TTC4A0A0A0MT08 1334 aa25.17■■□□□ 1.62
CLN3-209ENST00000561689 MINDY4BA8MYZ0 360 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 CCDC93Q567U6 631 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 TACC3Q9Y6A5 838 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 NEDD4P46934 1319 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 F8W031 263 aaPredicted RBP25.16■■□□□ 1.62
CLN3-209ENST00000561689 ECE2O60344 883 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 MCM5P33992 734 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 KLHL34Q8N239 644 aa25.16■■□□□ 1.62
CLN3-209ENST00000561689 SH3RF3Q8TEJ3 882 aaPredicted RBP25.16■■□□□ 1.62
CLN3-209ENST00000561689 SMIM22K7EJ46 135 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 PRC1O43663 620 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 BAG3O95817 575 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 PPARAQ07869 468 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 ST3GAL1Q11201 340 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 SUPT20HQ8NEM7 779 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 SGIP1Q9BQI5 828 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 PIM2Q9P1W9 311 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 CHD4Q14839 1912 aa25.15■■□□□ 1.62
CLN3-209ENST00000561689 CYP2D7A0A087X1C5 515 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 B4E1Z4 1266 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 DTNBO60941 627 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 ANTXR2P58335 489 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 KIAA2012Q0VF49 1180 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 STK3Q13188 491 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 AKNAD1Q5T1N1 836 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 NOL10Q9BSC4 688 aaKnown RBP25.14■■□□□ 1.62
CLN3-209ENST00000561689 DCP1AQ9NPI6 582 aaPredicted RBP25.14■■□□□ 1.62
CLN3-209ENST00000561689 GPHNQ9NQX3 736 aaPredicted RBP25.14■■□□□ 1.62
CLN3-209ENST00000561689 CCDC88AQ3V6T2 1871 aa25.14■■□□□ 1.62
CLN3-209ENST00000561689 BTDP43251 543 aa25.14■■□□□ 1.61
CLN3-209ENST00000561689 GIMAP6Q6P9H5 292 aa25.14■■□□□ 1.61
CLN3-209ENST00000561689 RTKN2Q8IZC4 609 aa25.14■■□□□ 1.61
CLN3-209ENST00000561689 DLEC1Q9Y238 1755 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 PPIP5K2O43314 1243 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 PPP4CP60510 307 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 APOBRQ0VD83 1088 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 PKP1Q13835 747 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 CTR9Q6PD62 1173 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 MFSD6Q6ZSS7 791 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 AGXT2Q9BYV1 514 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 ATP8A2Q9NTI2 1148 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 LAMA4Q16363 1823 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 USP17L12C9JPN9 530 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 USP17L21D6R901 530 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 CYB5R4Q7L1T6 521 aa25.13■■□□□ 1.61
CLN3-209ENST00000561689 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.13■■□□□ 1.61
CLN3-209ENST00000561689 GPR75-ASB3A0A0A6YYF3 556 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 RAB3GAP1Q15042 981 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 NFKBIBQ15653 356 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 GRIPAP1Q4V328 841 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 SLF2Q8IX21 1173 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 STAG1Q8WVM7 1258 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 TTF2Q9UNY4 1162 aaKnown RBP25.12■■□□□ 1.61
CLN3-209ENST00000561689 SUGT1Q9Y2Z0 365 aa25.12■■□□□ 1.61
CLN3-209ENST00000561689 PTGER2P43116 358 aa25.11■■□□□ 1.61
CLN3-209ENST00000561689 USP5P45974 858 aa25.11■■□□□ 1.61
CLN3-209ENST00000561689 FAM163AQ96GL9 167 aaPredicted RBP25.11■■□□□ 1.61
CLN3-209ENST00000561689 TOMM22Q9NS69 142 aa25.11■■□□□ 1.61
CLN3-209ENST00000561689 KIF13BQ9NQT8 1826 aa25.11■■□□□ 1.61
CLN3-209ENST00000561689 EVX2Q03828 476 aa25.11■■□□□ 1.61
CLN3-209ENST00000561689 RRP12Q5JTH9 1297 aaKnown RBP25.11■■□□□ 1.61
CLN3-209ENST00000561689 ANAPC4Q9UJX5 808 aa25.11■■□□□ 1.61
CLN3-209ENST00000561689 DALRD3Q5D0E6 543 aaKnown RBP25.1■■□□□ 1.61
CLN3-209ENST00000561689 PSMD1Q99460 953 aa25.1■■□□□ 1.61
CLN3-209ENST00000561689 CNNM2Q9H8M5 875 aa25.1■■□□□ 1.61
CLN3-209ENST00000561689 ZNF277Q9NRM2 450 aaPredicted RBP25.1■■□□□ 1.61
CLN3-209ENST00000561689 NAP1L2Q9ULW6 460 aaPredicted RBP25.1■■□□□ 1.61
CLN3-209ENST00000561689 GAKO14976 1311 aa25.1■■□□□ 1.61
CLN3-209ENST00000561689 KDM4AO75164 1064 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 SCNN1DP51172 638 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 STRIP1Q5VSL9 837 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 FBXL16Q8N461 479 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 TGFBRAP1Q8WUH2 860 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 MCM9Q9NXL9 1143 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 ZSWIM5Q9P217 1185 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 SMC3Q9UQE7 1217 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 DAGLAQ9Y4D2 1042 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 CYP2D6P10635 497 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 DACT2Q5SW24 774 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms