RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PDE4DIPQ5VU43 2346 aa14.52□□□□□ -0.08
USP3-220ENST00000561381 ATP2B3Q16720 1220 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 OTUD7BQ6GQQ9 843 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 HHIPL2Q6UWX4 724 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 CD99L2Q8TCZ2 262 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 OTUD5Q96G74 571 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 MEIS3Q99687 375 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 TMOD2Q9NZR1 351 aa14.52□□□□□ -0.09
USP3-220ENST00000561381 MYH13Q9UKX3 1938 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 MAST3O60307 1309 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 CCL15-CCL14A0A0B4J2E2 113 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 CIAO1O76071 339 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 CT47B1P0C2W7 299 aaPredicted RBP14.51□□□□□ -0.09
USP3-220ENST00000561381 PRDX5P30044 214 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 RARSP54136 660 aaKnown RBP14.51□□□□□ -0.09
USP3-220ENST00000561381 DIXDC1Q155Q3 683 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 CCL15Q16663 113 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 FAM83AQ86UY5 434 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 WDR66Q8TBY9 1149 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 ZKSCAN4Q969J2 545 aaPredicted RBP14.51□□□□□ -0.09
USP3-220ENST00000561381 API5Q9BZZ5 524 aaKnown RBP14.51□□□□□ -0.09
USP3-220ENST00000561381 CEP126Q9P2H0 1117 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 DAGLAQ9Y4D2 1042 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 CSADQ9Y600 493 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 SNCAIPQ9Y6H5 919 aa14.51□□□□□ -0.09
USP3-220ENST00000561381 ADORA1P30542 326 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 PHKA1P46020 1223 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 FKBP1CQ5VVH2 108 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 MIGA2Q7L4E1 593 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 FAM43AQ8N2R8 423 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 ERO1AQ96HE7 468 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 WRNIP1Q96S55 665 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 FBXO3Q9UK99 471 aa14.5□□□□□ -0.09
USP3-220ENST00000561381 SPDYE5A6NIY4 337 aa14.49□□□□□ -0.09
USP3-220ENST00000561381 GTF2A2P52657 109 aa14.49□□□□□ -0.09
USP3-220ENST00000561381 SP3Q02447 781 aa14.49□□□□□ -0.09
USP3-220ENST00000561381 TCP10Q12799 353 aa14.49□□□□□ -0.09
USP3-220ENST00000561381 NFIAQ12857 509 aa14.49□□□□□ -0.09
USP3-220ENST00000561381 CDC42EP5Q6NZY7 148 aa14.49□□□□□ -0.09
USP3-220ENST00000561381 HTTP42858 3142 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 CCER2I3L3R5 266 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 INPP5BP32019 993 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 IL15P40933 162 aaPredicted RBP14.48□□□□□ -0.09
USP3-220ENST00000561381 TAF1CQ15572 869 aaPredicted RBP14.48□□□□□ -0.09
USP3-220ENST00000561381 ERO1BQ86YB8 467 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 DCBLD2Q96PD2 775 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 TNNQ9UQP3 1299 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 PTPN22Q9Y2R2 807 aa14.48□□□□□ -0.09
USP3-220ENST00000561381 RPAP1Q9BWH6 1393 aaPredicted RBP14.47□□□□□ -0.09
USP3-220ENST00000561381 IRF6O14896 467 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 SLC34A2O95436 690 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 LDHBP07195 334 aaKnown RBP14.47□□□□□ -0.09
USP3-220ENST00000561381 TIMM10P62072 90 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 CCDC102BQ68D86 513 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 INTS3Q68E01 1043 aaKnown RBP14.47□□□□□ -0.09
USP3-220ENST00000561381 ZFPM1Q8IX07 1006 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 FAM151AQ8WW52 585 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 EFCC1Q9HA90 598 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 COPRSQ9NQ92 184 aa14.47□□□□□ -0.09
USP3-220ENST00000561381 GNL3LQ9NVN8 582 aaKnown RBP14.47□□□□□ -0.09
USP3-220ENST00000561381 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.47□□□□□ -0.09
USP3-220ENST00000561381 POTEFA5A3E0 1075 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 BTBD19C9JJ37 291 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 GALR2O43603 387 aaPredicted RBP14.46□□□□□ -0.09
USP3-220ENST00000561381 DCAF15Q66K64 600 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 ZNF341Q9BYN7 854 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 ZFYVE28Q9HCC9 887 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 USP40Q9NVE5 1235 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 FAM198AQ9UFP1 575 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 DENND2AQ9ULE3 1009 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 HDAC5Q9UQL6 1122 aa14.46□□□□□ -0.09
USP3-220ENST00000561381 SALL1Q9NSC2 1324 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 SEMA3EO15041 775 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 SRGAP3O43295 1099 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 CETPP11597 493 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 SNAPC2Q13487 334 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 RASGRF1Q13972 1273 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 ARHGAP45Q92619 1136 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 HOOK2Q96ED9 719 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 AK9Q5TCS8 1911 aa14.45□□□□□ -0.1
USP3-220ENST00000561381 KIAA0100Q14667 2235 aaKnown RBP14.44□□□□□ -0.1
USP3-220ENST00000561381 BCAR3O75815 825 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 TRIM27P14373 513 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 TFCP2Q12800 502 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 PPIL2Q13356 520 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.44□□□□□ -0.1
USP3-220ENST00000561381 ARHGAP39Q9C0H5 1083 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 ZNF112Q9UJU3 913 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 CENPFP49454 3210 aa14.44□□□□□ -0.1
USP3-220ENST00000561381 ZSWIM8A7E2V4 1837 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 MYH2Q9UKX2 1941 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 A0A1B0GUL7 405 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 TLR2O60603 784 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 GNAI3P08754 354 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 FRAT1Q92837 279 aaPredicted RBP14.43□□□□□ -0.1
USP3-220ENST00000561381 ARMC5Q96C12 935 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 XAGE2Q96GT9 111 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 ABCF2Q9UG63 623 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 PTCH2Q9Y6C5 1203 aa14.43□□□□□ -0.1
USP3-220ENST00000561381 GAKO14976 1311 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms