RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 LDLRAD1Q5T700 205 aa16.04■□□□□ 0.16
SHMT2-211ENST00000554310 ZNF512BQ96KM6 892 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-211ENST00000554310 ZIC5Q96T25 663 aa16.04■□□□□ 0.16
SHMT2-211ENST00000554310 PRDM10Q9NQV6 1147 aa16.04■□□□□ 0.16
SHMT2-211ENST00000554310 EXOC6BQ9Y2D4 811 aa16.04■□□□□ 0.16
SHMT2-211ENST00000554310 HSPA8P11142 646 aaKnown RBP16.03■□□□□ 0.16
SHMT2-211ENST00000554310 MCAMP43121 646 aa16.03■□□□□ 0.16
SHMT2-211ENST00000554310 IREB2P48200 963 aaKnown RBP16.03■□□□□ 0.16
SHMT2-211ENST00000554310 CACNB3P54284 484 aa16.03■□□□□ 0.16
SHMT2-211ENST00000554310 TTC39AQ5SRH9 613 aa16.03■□□□□ 0.16
SHMT2-211ENST00000554310 ERICH6Q7L0X2 663 aa16.03■□□□□ 0.16
SHMT2-211ENST00000554310 TMEM39BQ9GZU3 492 aa16.03■□□□□ 0.16
SHMT2-211ENST00000554310 DBNLQ9UJU6 430 aaKnown RBP16.03■□□□□ 0.16
SHMT2-211ENST00000554310 COL13A1Q5TAT6 717 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-211ENST00000554310 PI16Q6UXB8 463 aa16.02■□□□□ 0.16
SHMT2-211ENST00000554310 HOOK2Q96ED9 719 aa16.02■□□□□ 0.16
SHMT2-211ENST00000554310 DOCK2Q92608 1830 aa16.02■□□□□ 0.16
SHMT2-211ENST00000554310 RFX7Q2KHR2 1363 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 MROH7-TTC4A0A0A0MT08 1334 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 LBX1P52954 281 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 GSTO1P78417 241 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 CDC42EP5Q6NZY7 148 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 CDAN1Q8IWY9 1227 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 SIRT2Q8IXJ6 389 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 EAF2Q96CJ1 260 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-211ENST00000554310 FAM163AQ96GL9 167 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-211ENST00000554310 SAGE1Q9NXZ1 904 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 FZD1Q9UP38 647 aa16.01■□□□□ 0.15
SHMT2-211ENST00000554310 IGSF3O75054 1194 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 MECOMQ03112 1051 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 AACSQ86V21 672 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 ANKRD13AQ8IZ07 590 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 RHPN1Q8TCX5 695 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 FAM151AQ8WW52 585 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 KIF1BPQ96EK5 621 aa16■□□□□ 0.15
SHMT2-211ENST00000554310 TLR7Q9NYK1 1049 aaKnown RBP16■□□□□ 0.15
SHMT2-211ENST00000554310 RAB11FIP3O75154 756 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 USP2O75604 605 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-211ENST00000554310 ZBTB48P10074 688 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-211ENST00000554310 RRP1P56182 461 aaKnown RBP15.99■□□□□ 0.15
SHMT2-211ENST00000554310 ERICH6BQ5W0A0 696 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 SPRYD7Q5W111 196 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 NSUN4Q96CB9 384 aaKnown RBP15.99■□□□□ 0.15
SHMT2-211ENST00000554310 CSRNP1Q96S65 589 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 CCDC8Q9H0W5 538 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-211ENST00000554310 USP40Q9NVE5 1235 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 RAI14Q9P0K7 980 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 AK9Q5TCS8 1911 aa15.99■□□□□ 0.15
SHMT2-211ENST00000554310 LDHCP07864 332 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 BTDP43251 543 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 SREBF2Q12772 1141 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 NFIAQ12857 509 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 DCAF15Q66K64 600 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 TBC1D9Q6ZT07 1266 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 CLASRPQ8N2M8 674 aaKnown RBP15.98■□□□□ 0.15
SHMT2-211ENST00000554310 ZNF384Q8TF68 577 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 SLC10A4Q96EP9 437 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 CLMNQ96JQ2 1002 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 IDI2Q9BXS1 227 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 LRP2BPQ9P2M1 347 aa15.98■□□□□ 0.15
SHMT2-211ENST00000554310 MYO5AQ9Y4I1 1855 aaKnown RBP15.97■□□□□ 0.15
SHMT2-211ENST00000554310 GPR75-ASB3A0A0A6YYF3 556 aa15.97■□□□□ 0.15
SHMT2-211ENST00000554310 MAP4K4O95819 1239 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-211ENST00000554310 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.97■□□□□ 0.158e-7■■□□□ 11.7
SHMT2-211ENST00000554310 WNK4Q96J92 1243 aa15.97■□□□□ 0.15
SHMT2-211ENST00000554310 IL1RAPL2Q9NP60 686 aa15.97■□□□□ 0.15
SHMT2-211ENST00000554310 SNRKQ9NRH2 765 aa15.97■□□□□ 0.15
SHMT2-211ENST00000554310 FAM198AQ9UFP1 575 aa15.97■□□□□ 0.15
SHMT2-211ENST00000554310 TSKSQ9UJT2 592 aa15.97■□□□□ 0.15
SHMT2-211ENST00000554310 ENTPD3O75355 529 aa15.96■□□□□ 0.15
SHMT2-211ENST00000554310 CYP2E1P05181 493 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-211ENST00000554310 MAP3K9P80192 1104 aa15.96■□□□□ 0.15
SHMT2-211ENST00000554310 TCP10Q12799 353 aa15.96■□□□□ 0.15
SHMT2-211ENST00000554310 TNS4Q8IZW8 715 aa15.96■□□□□ 0.15
SHMT2-211ENST00000554310 RNF186Q9NXI6 227 aa15.96■□□□□ 0.15
SHMT2-211ENST00000554310 CSADQ9Y600 493 aa15.96■□□□□ 0.15
SHMT2-211ENST00000554310 COL2A1P02458 1487 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-211ENST00000554310 MANSC4A6NHS7 340 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-211ENST00000554310 APBB1O00213 710 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 WDHD1O75717 1129 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-211ENST00000554310 ZAP70P43403 619 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 TM4SF4P48230 202 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 RGS3P49796 1198 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 RHBDL3P58872 404 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 MKRN3Q13064 507 aaKnown RBP15.95■□□□□ 0.14
SHMT2-211ENST00000554310 VGLL4Q14135 290 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-211ENST00000554310 ZNF341Q9BYN7 854 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 FOCADQ5VW36 1801 aa15.95■□□□□ 0.14
SHMT2-211ENST00000554310 NPM3O75607 178 aaKnown RBP15.94■□□□□ 0.14
SHMT2-211ENST00000554310 TRPA1O75762 1119 aa15.94■□□□□ 0.14
SHMT2-211ENST00000554310 IFIT2P09913 472 aaKnown RBP15.94■□□□□ 0.14
SHMT2-211ENST00000554310 NAA16Q6N069 864 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-211ENST00000554310 TMED8Q6PL24 325 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-211ENST00000554310 WRNIP1Q96S55 665 aa15.94■□□□□ 0.14
SHMT2-211ENST00000554310 NOL10Q9BSC4 688 aaKnown RBP15.94■□□□□ 0.14
SHMT2-211ENST00000554310 ELP3Q9H9T3 547 aa15.94■□□□□ 0.14
SHMT2-211ENST00000554310 ATRNL1Q5VV63 1379 aa15.94■□□□□ 0.14
SHMT2-211ENST00000554310 CDK5RAP2Q96SN8 1893 aa15.94■□□□□ 0.14
SHMT2-211ENST00000554310 CASP8AP2Q9UKL3 1982 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms