RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 FMR1Q06787 632 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS29-210ENST00000552130 FKBP5Q13451 457 aaPredicted RBP8.26□□□□□ -1.09
VPS29-210ENST00000552130 OCLNQ16625 522 aa8.26□□□□□ -1.09
VPS29-210ENST00000552130 COL13A1Q5TAT6 717 aaPredicted RBP8.26□□□□□ -1.09
VPS29-210ENST00000552130 INTS5Q6P9B9 1019 aaKnown RBP8.26□□□□□ -1.09
VPS29-210ENST00000552130 ADAMTSL4Q6UY14 1074 aa8.26□□□□□ -1.09
VPS29-210ENST00000552130 TMC7Q7Z402 723 aa8.26□□□□□ -1.09
VPS29-210ENST00000552130 DTX1Q86Y01 620 aa8.26□□□□□ -1.09
VPS29-210ENST00000552130 MCF2L2Q86YR7 1114 aa8.26□□□□□ -1.09
VPS29-210ENST00000552130 DUSP9Q99956 384 aaKnown RBP8.26□□□□□ -1.09
VPS29-210ENST00000552130 LINC01387J3KSC0 135 aa8.25□□□□□ -1.09
VPS29-210ENST00000552130 LDHBP07195 334 aaKnown RBP8.25□□□□□ -1.09
VPS29-210ENST00000552130 CD68P34810 354 aaPredicted RBP8.25□□□□□ -1.09
VPS29-210ENST00000552130 FAM26DQ5JW98 314 aa8.25□□□□□ -1.09
VPS29-210ENST00000552130 CLEC4GQ6UXB4 293 aa8.25□□□□□ -1.09
VPS29-210ENST00000552130 PNISRQ8TF01 805 aaKnown RBP8.25□□□□□ -1.09
VPS29-210ENST00000552130 PRIMPOLQ96LW4 560 aa8.25□□□□□ -1.09
VPS29-210ENST00000552130 CEP41Q9BYV8 373 aa8.25□□□□□ -1.09
VPS29-210ENST00000552130 C7orf69Q9H7B7 122 aa8.25□□□□□ -1.09
VPS29-210ENST00000552130 PSMD2Q13200 908 aa8.24□□□□□ -1.09
VPS29-210ENST00000552130 LCE1DQ5T752 114 aa8.24□□□□□ -1.09
VPS29-210ENST00000552130 RNF43Q68DV7 783 aa8.24□□□□□ -1.09
VPS29-210ENST00000552130 KIAA1211Q6ZU35 1233 aa8.24□□□□□ -1.09
VPS29-210ENST00000552130 RBCK1Q9BYM8 510 aa8.24□□□□□ -1.09
VPS29-210ENST00000552130 GNL3LQ9NVN8 582 aaKnown RBP8.24□□□□□ -1.09
VPS29-210ENST00000552130 GEMIN8Q9NWZ8 242 aaKnown RBP8.24□□□□□ -1.09
VPS29-210ENST00000552130 PRKAB1Q9Y478 270 aa8.24□□□□□ -1.09
VPS29-210ENST00000552130 TREHO43280 583 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 PDGFRBP09619 1106 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 DAB2P98082 770 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 MTMR3Q13615 1198 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 ACAD11Q709F0 780 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 C11orf96Q7Z7L8 435 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 VPS37DQ86XT2 251 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 TRIM42Q8IWZ5 723 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 MYRFLQ96LU7 910 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 DBNDD2Q9BQY9 259 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 SEPT3Q9UH03 358 aa8.23□□□□□ -1.09
VPS29-210ENST00000552130 WDHD1O75717 1129 aaPredicted RBP8.22□□□□□ -1.09
VPS29-210ENST00000552130 KIF4AO95239 1232 aa8.22□□□□□ -1.09
VPS29-210ENST00000552130 FGRP09769 529 aa8.22□□□□□ -1.09
VPS29-210ENST00000552130 ATP11AP98196 1134 aa8.22□□□□□ -1.09
VPS29-210ENST00000552130 AMPD3Q01432 767 aa8.22□□□□□ -1.09
VPS29-210ENST00000552130 KRBA2Q6ZNG9 492 aa8.22□□□□□ -1.09
VPS29-210ENST00000552130 SAP130Q9H0E3 1048 aa8.22□□□□□ -1.09
VPS29-210ENST00000552130 TYW1Q9NV66 732 aaKnown RBP8.22□□□□□ -1.09
VPS29-210ENST00000552130 BSDC1Q9NW68 430 aaPredicted RBP8.22□□□□□ -1.09
VPS29-210ENST00000552130 CDC27P30260 824 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 PLEKHG4Q58EX7 1191 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 ODR4Q5SWX8 454 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 ZNF654Q8IZM8 581 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 PRPF38AQ8NAV1 312 aaKnown RBP8.21□□□□□ -1.1
VPS29-210ENST00000552130 KLHL23Q8NBE8 558 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 UTP4Q969X6 686 aaKnown RBP8.21□□□□□ -1.1
VPS29-210ENST00000552130 RNF19AQ9NV58 838 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 RNF114Q9Y508 228 aa8.21□□□□□ -1.1
VPS29-210ENST00000552130 HMX2A2RU54 273 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 TNFRSF10BO14763 440 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 FSCN2O14926 492 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 ADAM11O75078 769 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 GRIK1P39086 918 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 MAPK8P45983 427 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 HYAL2Q12891 473 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 TXNDC11Q6PKC3 985 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 CLEC10AQ8IUN9 316 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 COL26A1Q96A83 441 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 C8orf48Q96LL4 319 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 FRMD6Q96NE9 622 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 FAM83CQ9BQN1 747 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS29-210ENST00000552130 MTA3Q9BTC8 594 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 TMX1Q9H3N1 280 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 TCEAL9Q9UHQ7 104 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 DDX41Q9UJV9 622 aaKnown RBP8.2□□□□□ -1.1
VPS29-210ENST00000552130 COMMD10Q9Y6G5 202 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 RPS6KL1Q9Y6S9 549 aa8.2□□□□□ -1.1
VPS29-210ENST00000552130 ENOX2Q16206 610 aaKnown RBP8.19□□□□□ -1.1
VPS29-210ENST00000552130 CEP135Q66GS9 1140 aa8.19□□□□□ -1.1
VPS29-210ENST00000552130 FAM20CQ8IXL6 584 aa8.19□□□□□ -1.1
VPS29-210ENST00000552130 CKAP2LQ8IYA6 745 aa8.19□□□□□ -1.1
VPS29-210ENST00000552130 CNPY4Q8N129 248 aa8.19□□□□□ -1.1
VPS29-210ENST00000552130 RNPC3Q96LT9 517 aaKnown RBP8.19□□□□□ -1.1
VPS29-210ENST00000552130 LACRTQ9GZZ8 138 aa8.19□□□□□ -1.1
VPS29-210ENST00000552130 SLKQ9H2G2 1235 aaPredicted RBP8.19□□□□□ -1.1
VPS29-210ENST00000552130 RASSF4Q9H2L5 321 aa8.19□□□□□ -1.1
VPS29-210ENST00000552130 TTF2Q9UNY4 1162 aaKnown RBP8.19□□□□□ -1.1
VPS29-210ENST00000552130 UBAP1LF5GYI3 381 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 SMNDC1O75940 238 aaKnown RBP eCLIP8.18□□□□□ -1.16e-11■■■■□ 20.7
VPS29-210ENST00000552130 EPHA1P21709 976 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 SERINC3Q13530 473 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 ZNF394Q53GI3 561 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 NBPF6Q5VWK0 638 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 C16orf46Q6P387 395 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.18□□□□□ -1.1
VPS29-210ENST00000552130 SCYL1Q96KG9 808 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 NBPF4Q96M43 638 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 MKNK1Q9BUB5 465 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 CARD10Q9BWT7 1032 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 ADAM19Q9H013 955 aa8.18□□□□□ -1.1
VPS29-210ENST00000552130 ADGRE2Q9UHX3 823 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms