RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 LAMB1P07942 1786 aa20.2■□□□□ 0.82
VPS29-207ENST00000549970 IGF2BP3O00425 579 aaKnown RBP eCLIP20.19■□□□□ 0.82
VPS29-207ENST00000549970 ITPRIPQ8IWB1 547 aa20.19■□□□□ 0.82
VPS29-207ENST00000549970 ZGPATQ8N5A5 531 aaKnown RBP20.19■□□□□ 0.82
VPS29-207ENST00000549970 CNKSR2Q8WXI2 1034 aa20.19■□□□□ 0.82
VPS29-207ENST00000549970 CFHR5Q9BXR6 569 aa20.19■□□□□ 0.82
VPS29-207ENST00000549970 C1orf115Q9H7X2 142 aa20.19■□□□□ 0.82
VPS29-207ENST00000549970 ABCF2Q9UG63 623 aa20.19■□□□□ 0.82
VPS29-207ENST00000549970 ZBTB22O15209 634 aa20.18■□□□□ 0.82
VPS29-207ENST00000549970 RLBP1P12271 317 aa20.18■□□□□ 0.82
VPS29-207ENST00000549970 TCP10Q12799 353 aa20.18■□□□□ 0.82
VPS29-207ENST00000549970 DZIP1Q86YF9 867 aaKnown RBP20.18■□□□□ 0.82
VPS29-207ENST00000549970 RPAP1Q9BWH6 1393 aaPredicted RBP20.18■□□□□ 0.82
VPS29-207ENST00000549970 MYH2Q9UKX2 1941 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 NFIAQ12857 509 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 NOM1Q5C9Z4 860 aaKnown RBP20.17■□□□□ 0.82
VPS29-207ENST00000549970 GORABQ5T7V8 394 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 FAM151AQ8WW52 585 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 HOOK2Q96ED9 719 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 WRNIP1Q96S55 665 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 USP40Q9NVE5 1235 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 PDS5AQ29RF7 1337 aaKnown RBP20.17■□□□□ 0.82
VPS29-207ENST00000549970 AK9Q5TCS8 1911 aa20.17■□□□□ 0.82
VPS29-207ENST00000549970 FKTNO75072 461 aa20.16■□□□□ 0.82
VPS29-207ENST00000549970 DCAF15Q66K64 600 aa20.16■□□□□ 0.82
VPS29-207ENST00000549970 OTUD7BQ6GQQ9 843 aa20.16■□□□□ 0.82
VPS29-207ENST00000549970 MIGA2Q7L4E1 593 aa20.16■□□□□ 0.82
VPS29-207ENST00000549970 OTUD5Q96G74 571 aa20.16■□□□□ 0.82
VPS29-207ENST00000549970 ATP8B2P98198 1209 aa20.15■□□□□ 0.82
VPS29-207ENST00000549970 OS9Q13438 667 aaPredicted RBP20.15■□□□□ 0.82
VPS29-207ENST00000549970 POLA2Q14181 598 aa20.15■□□□□ 0.82
VPS29-207ENST00000549970 ZKSCAN4Q969J2 545 aaPredicted RBP20.15■□□□□ 0.82
VPS29-207ENST00000549970 PTPN18Q99952 460 aa20.15■□□□□ 0.82
VPS29-207ENST00000549970 SNCAIPQ9Y6H5 919 aa20.15■□□□□ 0.82
VPS29-207ENST00000549970 GAKO14976 1311 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 TESPA1A2RU30 521 aaPredicted RBP20.14■□□□□ 0.81
VPS29-207ENST00000549970 ZBTB7BO15156 539 aaPredicted RBP20.14■□□□□ 0.81
VPS29-207ENST00000549970 SPTY2D1Q68D10 685 aaPredicted RBP20.14■□□□□ 0.81
VPS29-207ENST00000549970 PI16Q6UXB8 463 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 SSH3Q8TE77 659 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 MS4A4AQ96JQ5 239 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 ZNF341Q9BYN7 854 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 HMG20BQ9P0W2 317 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 FAM198AQ9UFP1 575 aa20.14■□□□□ 0.81
VPS29-207ENST00000549970 CCL15-CCL14A0A0B4J2E2 113 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 SPDYE5A6NIY4 337 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 GTF2A2P52657 109 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 CRHR2Q13324 411 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 CCL15Q16663 113 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 ERICH6Q7L0X2 663 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 SLF2Q8IX21 1173 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 SPATA5Q8NB90 893 aa20.13■□□□□ 0.81
VPS29-207ENST00000549970 SURF6O75683 361 aaKnown RBP20.12■□□□□ 0.81
VPS29-207ENST00000549970 ARID4AP29374 1257 aaPredicted RBP20.12■□□□□ 0.81
VPS29-207ENST00000549970 PKN2Q16513 984 aaKnown RBP20.12■□□□□ 0.81
VPS29-207ENST00000549970 ERO1BQ86YB8 467 aa20.12■□□□□ 0.81
VPS29-207ENST00000549970 ZFPM1Q8IX07 1006 aa20.12■□□□□ 0.81
VPS29-207ENST00000549970 PANK1Q8TE04 598 aa20.12■□□□□ 0.81
VPS29-207ENST00000549970 BRI3BPQ8WY22 251 aa20.12■□□□□ 0.81
VPS29-207ENST00000549970 MROH7-TTC4A0A0A0MT08 1334 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 INPP5BP32019 993 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 BTDP43251 543 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 RGS3P49796 1198 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 MECOMQ03112 1051 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 TNNI3KQ59H18 835 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 TBC1D9Q6ZT07 1266 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 HPS5Q9UPZ3 1129 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 FPGT-TNNI3KV9GXZ4 949 aa20.11■□□□□ 0.81
VPS29-207ENST00000549970 MCAMP43121 646 aa20.1■□□□□ 0.81
VPS29-207ENST00000549970 FAM163AQ96GL9 167 aaPredicted RBP20.1■□□□□ 0.81
VPS29-207ENST00000549970 IDI2Q9BXS1 227 aa20.1■□□□□ 0.81
VPS29-207ENST00000549970 IRF6O14896 467 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 UQCRFS1P1P0C7P4 283 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 RGS19P49795 217 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 SOX10P56693 466 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 PICALMQ13492 652 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 TTC39AQ5SRH9 613 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 ZNF384Q8TF68 577 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 DBNDD2Q9BQY9 259 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 GPR108Q9NPR9 543 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 RAI14Q9P0K7 980 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 DOCK2Q92608 1830 aa20.09■□□□□ 0.81
VPS29-207ENST00000549970 RFX7Q2KHR2 1363 aa20.08■□□□□ 0.81
VPS29-207ENST00000549970 ENTPD3O75355 529 aa20.08■□□□□ 0.81
VPS29-207ENST00000549970 MLLT1Q03111 559 aaPredicted RBP20.08■□□□□ 0.81
VPS29-207ENST00000549970 PPIL2Q13356 520 aa20.08■□□□□ 0.81
VPS29-207ENST00000549970 TAF1CQ15572 869 aaPredicted RBP20.08■□□□□ 0.81
VPS29-207ENST00000549970 FBXO46Q6PJ61 603 aaPredicted RBP20.08■□□□□ 0.81
VPS29-207ENST00000549970 ZSCAN29Q8IWY8 852 aaPredicted RBP20.08■□□□□ 0.81
VPS29-207ENST00000549970 FAM43AQ8N2R8 423 aa20.08■□□□□ 0.81
VPS29-207ENST00000549970 NSUN4Q96CB9 384 aaKnown RBP20.08■□□□□ 0.81
VPS29-207ENST00000549970 DDX4Q9NQI0 724 aaKnown RBP20.08■□□□□ 0.81
VPS29-207ENST00000549970 ZNF112Q9UJU3 913 aa20.08■□□□□ 0.81
VPS29-207ENST00000549970 TRIM17Q9Y577 477 aa20.08■□□□□ 0.81
VPS29-207ENST00000549970 GPR75-ASB3A0A0A6YYF3 556 aa20.07■□□□□ 0.8
VPS29-207ENST00000549970 WDHD1O75717 1129 aaPredicted RBP20.07■□□□□ 0.8
VPS29-207ENST00000549970 CETPP11597 493 aa20.07■□□□□ 0.8
VPS29-207ENST00000549970 GSTO1P78417 241 aa20.07■□□□□ 0.8
VPS29-207ENST00000549970 SNAPC2Q13487 334 aa20.07■□□□□ 0.8
VPS29-207ENST00000549970 CCDC158Q5M9N0 1113 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms