RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RPS6KA4O75676 772 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 HMGB2P26583 209 aaKnown RBP11.5□□□□□ -0.57
SS18-205ENST00000542420 FAM160A1Q05DH4 1040 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 AKNAD1Q5T1N1 836 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 SASS6Q6UVJ0 657 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 TBC1D10CQ8IV04 446 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 IGDCC4Q8TDY8 1250 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 ACSBG1Q96GR2 724 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 DENND2AQ9ULE3 1009 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 MRVI1Q9Y6F6 885 aa11.5□□□□□ -0.57
SS18-205ENST00000542420 METAP2P50579 478 aaKnown RBP eCLIP11.49□□□□□ -0.57
SS18-205ENST00000542420 HAND2P61296 217 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 SART3Q15020 963 aaKnown RBP11.49□□□□□ -0.57
SS18-205ENST00000542420 APOA5Q6Q788 366 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 MAGEB6Q8N7X4 407 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 ANKRD2Q9GZV1 360 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.49□□□□□ -0.57
SS18-205ENST00000542420 TFIP11Q9UBB9 837 aaKnown RBP11.49□□□□□ -0.57
SS18-205ENST00000542420 GSG1L2A8MUP6 293 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 MBD4O95243 580 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 ADCY5O95622 1261 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 FAM173BQ6P4H8 233 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 LINC00116Q8NCU8 138 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 ENGASEQ8NFI3 743 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 USP28Q96RU2 1077 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 NCOA5Q9HCD5 579 aaKnown RBP11.49□□□□□ -0.57
SS18-205ENST00000542420 SEC31BQ9NQW1 1179 aa11.49□□□□□ -0.57
SS18-205ENST00000542420 CCDC196A0A1B0GTZ2 297 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 ZBTB43O43298 467 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 CDC25BP30305 580 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 ILDR1Q86SU0 546 aaPredicted RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 NOL10Q9BSC4 688 aaKnown RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 LY9Q9HBG7 655 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 EPB41L4AQ9HCS5 686 aaPredicted RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 APPP05067 770 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 PTMAP06454 111 aaKnown RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 STX1AQ16623 288 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 CAVIN4Q5BKX8 364 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 MYSM1Q5VVJ2 828 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 SARM1Q6SZW1 724 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 SYNE3Q6ZMZ3 975 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 CYB5R4Q7L1T6 521 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 CCAR1Q8IX12 1150 aaKnown RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 ELOA2Q8IYF1 753 aaPredicted RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 JMYQ8N9B5 988 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 LINC00301Q8NCQ3 95 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 MRPS27Q92552 414 aaKnown RBP11.48□□□□□ -0.57
SS18-205ENST00000542420 TIGD1Q96MW7 591 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 BRIP1Q9BX63 1249 aa11.48□□□□□ -0.57
SS18-205ENST00000542420 FAM237AA0A1B0GTK4 181 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 KINO60870 393 aaKnown RBP11.47□□□□□ -0.57
SS18-205ENST00000542420 PPP6R2O75170 966 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 NR1I2O75469 434 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 IFNAR1P17181 557 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 KIF23Q02241 960 aaPredicted RBP11.47□□□□□ -0.57
SS18-205ENST00000542420 MFSD6Q6ZSS7 791 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 COL4A1P02462 1669 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 FGRP09769 529 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 TAF1P21675 1872 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 NEDD4P46934 1319 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 KIAA2012Q0VF49 1180 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 SNW1Q13573 536 aaKnown RBP11.47□□□□□ -0.57
SS18-205ENST00000542420 NTRK3Q16288 839 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 CHST3Q7LGC8 479 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 FBXO33Q7Z6M2 555 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 SMAP1Q8IYB5 467 aaPredicted RBP11.47□□□□□ -0.57
SS18-205ENST00000542420 BCL11BQ9C0K0 894 aaPredicted RBP11.47□□□□□ -0.57
SS18-205ENST00000542420 ANO10Q9NW15 660 aa11.47□□□□□ -0.57
SS18-205ENST00000542420 NAP1L2Q9ULW6 460 aaPredicted RBP11.47□□□□□ -0.57
SS18-205ENST00000542420 FMNL1O95466 1100 aaPredicted RBP11.46□□□□□ -0.57
SS18-205ENST00000542420 U2AF2P26368 475 aaKnown RBP eCLIP11.46□□□□□ -0.571e-7■■■□□ 16.4
SS18-205ENST00000542420 DHX8Q14562 1220 aaKnown RBP11.46□□□□□ -0.57
SS18-205ENST00000542420 TMEM67Q5HYA8 995 aa11.46□□□□□ -0.57
SS18-205ENST00000542420 HELBQ8NG08 1087 aaPredicted RBP11.46□□□□□ -0.57
SS18-205ENST00000542420 BPIFA3Q9BQP9 254 aa11.46□□□□□ -0.57
SS18-205ENST00000542420 LRP2BPQ9P2M1 347 aa11.46□□□□□ -0.57
SS18-205ENST00000542420 MYH2Q9UKX2 1941 aa11.46□□□□□ -0.57
SS18-205ENST00000542420 UBR3Q6ZT12 1888 aa11.46□□□□□ -0.57
SS18-205ENST00000542420 ERICH2A1L162 156 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 CCDC69A6NI79 296 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 GOLGA8AA7E2F4 631 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 IARSP41252 1262 aaKnown RBP11.46□□□□□ -0.58
SS18-205ENST00000542420 BCAMP50895 628 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 TRIM29Q14134 588 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 STK38Q15208 465 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 ERFEQ4G0M1 354 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 FMR1NBQ8N0W7 255 aaPredicted RBP11.46□□□□□ -0.58
SS18-205ENST00000542420 ALG1Q9BT22 464 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 MINPP1Q9UNW1 487 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 SLC12A7Q9Y666 1083 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 SLC4A4Q9Y6R1 1079 aa11.46□□□□□ -0.58
SS18-205ENST00000542420 BAZ2AQ9UIF9 1905 aaKnown RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 MAGEB6P1A0A0J9YX57 407 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 NUTM2BA6NNL0 878 aaPredicted RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 NUTM2EB1AL46 878 aaPredicted RBP11.45□□□□□ -0.58
SS18-205ENST00000542420 B4E1Z4 1266 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 SPTLC2O15270 562 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 CMA1P23946 247 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 TDO2P48775 406 aa11.45□□□□□ -0.58
SS18-205ENST00000542420 SLC39A14Q15043 492 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms