RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RGPD1P0DJD0 1748 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CTAGE15A4D2H0 777 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CTAGE9A4FU28 777 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 KIF28PB7ZC32 967 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CTAGE8P0CG41 777 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 E2F4Q16254 413 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 ZNF827Q17R98 1081 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 KLHL10Q6JEL2 608 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CTAGE6Q86UF2 777 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CTAGE4Q8IX94 777 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 HAUS7Q99871 368 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 MRPL44Q9H9J2 332 aaKnown RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CRYBG1Q9Y4K1 1723 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 AXDND1Q5T1B0 1012 aaPredicted RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 MICALL1Q8N3F8 863 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 ALG1Q9BT22 464 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CDC23Q9UJX2 597 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 SETD1AO15047 1707 aaKnown RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 AKR1B15C9JRZ8 316 aaPredicted RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 ATP2B1P20020 1258 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 SLC39A14Q15043 492 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 IMMTQ16891 758 aaKnown RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 CPLX2Q6PUV4 134 aaKnown RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 TC2NQ8N9U0 490 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 KIFC2Q96AC6 838 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 DSCC1Q9BVC3 393 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 HSD3B7Q9H2F3 369 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 C19orf44Q9H6X5 657 aa14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 MKRN1Q9UHC7 482 aaKnown RBP14.67□□□□□ -0.06
SFSWAP-209ENST00000540469 KIF23Q02241 960 aaPredicted RBP14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 FKBP4Q02790 459 aaKnown RBP eCLIP14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 TRDNQ13061 729 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 BEND6Q5SZJ8 279 aaPredicted RBP14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 NBPF6Q5VWK0 638 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 NBPF4Q96M43 638 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 PNKPQ96T60 521 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 FAM204AQ9H8W3 233 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 RAI14Q9P0K7 980 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 DACH1Q9UI36 760 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 KCNH3Q9ULD8 1083 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 SALL1Q9NSC2 1324 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 RXRAP19793 462 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 CASP8Q14790 479 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 LRRC59Q96AG4 307 aaKnown RBP14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 AIFM3Q96NN9 605 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 JCADQ9P266 1359 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 MAP2K7O14733 419 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 PACS2Q86VP3 889 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 TMEM139Q8IV31 216 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 XAGE3Q8WTP9 111 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 HELLSQ9NRZ9 838 aa14.66□□□□□ -0.06
SFSWAP-209ENST00000540469 IGKV5-2P06315 115 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 PIP4K2AP48426 406 aaPredicted RBP14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 GCKRQ14397 625 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 LONRF3Q496Y0 759 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 AKAP4Q5JQC9 854 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 VPS37DQ86XT2 251 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 DDX21Q9NR30 783 aaKnown RBP eCLIP14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 TUBE1Q9UJT0 475 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 SETD1BQ9UPS6 1966 aaKnown RBP14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 PLEKHG2Q9H7P9 1386 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 ATP5J2-PTCD1G3V325 749 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 PTCD1O75127 700 aaKnown RBP14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 IFIT1P09914 478 aaKnown RBP14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 TIMM10P62072 90 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 SMARCC1Q92922 1105 aaPredicted RBP14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 NEURL1BA8MQ27 555 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 PDE4BQ07343 736 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 SHC4Q6S5L8 630 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 COPS6Q7L5N1 327 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 FAM71BQ8TC56 605 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 ANKZF1Q9H8Y5 726 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 INTS13Q9NVM9 706 aa14.65□□□□□ -0.06
SFSWAP-209ENST00000540469 NEDD4P46934 1319 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 SH3TC1Q8TE82 1336 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 FOXN1O15353 648 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 VSNL1P62760 191 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 NUTM2AQ8IVF1 878 aaPredicted RBP14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 ATG3Q9NT62 314 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 TFRCP02786 760 aaKnown RBP14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 HSP90AB3PQ58FF7 597 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 IGSF22Q8N9C0 903 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 IQUBQ8NA54 791 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 ANKRD24Q8TF21 1146 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 COPRSQ9NQ92 184 aa14.64□□□□□ -0.07
SFSWAP-209ENST00000540469 MYO1BO43795 1136 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 PTPN12Q05209 780 aaKnown RBP14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 TTC39AQ5SRH9 613 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 LMOD2Q6P5Q4 547 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 NFXL1Q6ZNB6 911 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 METTL16Q86W50 562 aaKnown RBP14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 SLC35F6Q8N357 371 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 AFAP1L1Q8TED9 768 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 AKAP2Q9Y2D5 859 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 A0A087WZG4 1122 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 RNMTO43148 476 aaKnown RBP14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 STX17P56962 302 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 GDAP1L1Q96MZ0 367 aa14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 SAMSN1Q9NSI8 373 aaKnown RBP14.63□□□□□ -0.07
SFSWAP-209ENST00000540469 AMOTL2Q9Y2J4 779 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms