RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FAM43BQ6ZT52 329 aaPredicted RBP6.9□□□□□ -1.3
CD44-236ENST00000533222 STK35Q8TDR2 534 aa6.9□□□□□ -1.3
CD44-236ENST00000533222 BACH2Q9BYV9 841 aa6.9□□□□□ -1.3
CD44-236ENST00000533222 PPP4R2Q9NY27 417 aa6.9□□□□□ -1.3
CD44-236ENST00000533222 SCRIBQ14160 1630 aa6.9□□□□□ -1.31
CD44-236ENST00000533222 PLEKHD1A6NEE1 506 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 FAM181BA6NEQ2 426 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 F6X3S4 739 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 DLL1O00548 723 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 ENC1O14682 589 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 CTSBP07858 339 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 XRCC5P13010 732 aaKnown RBP6.89□□□□□ -1.31
CD44-236ENST00000533222 CALRP27797 417 aaKnown RBP6.89□□□□□ -1.31
CD44-236ENST00000533222 SSR1P43307 286 aaKnown RBP6.89□□□□□ -1.31
CD44-236ENST00000533222 GSK3AP49840 483 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 RAC1P63000 192 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 GSTM4Q03013 218 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 RASIP1Q5U651 963 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 FBXO11Q86XK2 927 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 OTUD6BQ8N6M0 293 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 UBASH3BQ8TF42 649 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 NRSN2Q9GZP1 204 aa6.89□□□□□ -1.31
CD44-236ENST00000533222 NOP53Q9NZM5 478 aaKnown RBP6.89□□□□□ -1.31
CD44-236ENST00000533222 C19orf57Q0VDD7 668 aa6.88□□□□□ -1.31
CD44-236ENST00000533222 TRIM28Q13263 835 aaKnown RBP6.88□□□□□ -1.31
CD44-236ENST00000533222 RPS26P11Q5JNZ5 115 aaPredicted RBP6.88□□□□□ -1.31
CD44-236ENST00000533222 FAM117BQ6P1L5 589 aa6.88□□□□□ -1.31
CD44-236ENST00000533222 TMED8Q6PL24 325 aaPredicted RBP6.88□□□□□ -1.31
CD44-236ENST00000533222 DTWD1Q8N5C7 304 aa6.88□□□□□ -1.31
CD44-236ENST00000533222 NECAB3Q96P71 396 aaPredicted RBP6.88□□□□□ -1.31
CD44-236ENST00000533222 PPM1HQ9ULR3 514 aa6.88□□□□□ -1.31
CD44-236ENST00000533222 DLGAP3O95886 979 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 ELNP15502 786 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 SELPP16109 830 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 CD68P34810 354 aaPredicted RBP6.87□□□□□ -1.31
CD44-236ENST00000533222 ZKSCAN8Q15776 578 aaPredicted RBP6.87□□□□□ -1.31
CD44-236ENST00000533222 MAP3K11Q16584 847 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 PRRT3Q5FWE3 981 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 TSHZ1Q6ZSZ6 1077 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 USP26Q9BXU7 913 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 OSGEPQ9NPF4 335 aa6.87□□□□□ -1.31
CD44-236ENST00000533222 KRBA1A5PL33 1030 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 SPDYE3A6NKU9 549 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 PIK3R2O00459 728 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 SPATA31C1P0DKV0 1188 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 TAF1CQ15572 869 aaPredicted RBP6.86□□□□□ -1.31
CD44-236ENST00000533222 CCDC85BQ15834 202 aaPredicted RBP6.86□□□□□ -1.31
CD44-236ENST00000533222 CTR9Q6PD62 1173 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 AGGF1Q8N302 714 aaeCLIP6.86□□□□□ -1.31
CD44-236ENST00000533222 KLHL23Q8NBE8 558 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 TMEM87AQ8NBN3 555 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 WNT8BQ93098 351 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 ZC3H12CQ9C0D7 883 aaKnown RBP6.86□□□□□ -1.31
CD44-236ENST00000533222 SOX17Q9H6I2 414 aaPredicted RBP6.86□□□□□ -1.31
CD44-236ENST00000533222 TMEM39AQ9NV64 488 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 TERF2IPQ9NYB0 399 aa6.86□□□□□ -1.31
CD44-236ENST00000533222 FEZ2Q9UHY8 353 aaPredicted RBP6.86□□□□□ -1.31
CD44-236ENST00000533222 USP31Q70CQ4 1352 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 LOC100289279A0A1B0GTE1 492 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 CCER2I3L3R5 266 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 VAMP1P23763 118 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 SATB1Q01826 763 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 OS9Q13438 667 aaPredicted RBP6.85□□□□□ -1.31
CD44-236ENST00000533222 SUZ12Q15022 739 aaKnown RBP6.85□□□□□ -1.31
CD44-236ENST00000533222 DNTTIP2Q5QJE6 756 aaKnown RBP6.85□□□□□ -1.31
CD44-236ENST00000533222 MPRIPQ6WCQ1 1025 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 SULF2Q8IWU5 870 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 EXOC8Q8IYI6 725 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.85□□□□□ -1.31
CD44-236ENST00000533222 DCAF5Q96JK2 942 aa6.85□□□□□ -1.31
CD44-236ENST00000533222 SRA1Q9HD15 236 aaKnown RBP6.85□□□□□ -1.31
CD44-236ENST00000533222 RAD50Q92878 1312 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 ALX3O95076 343 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 MAOBP27338 520 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 CHRNA4P43681 627 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 ARL4DP49703 201 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 ST13P50502 369 aaKnown RBP6.84□□□□□ -1.31
CD44-236ENST00000533222 FANCCQ00597 558 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 NBPF6Q5VWK0 638 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 PCNX4Q63HM2 1172 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 ACAD11Q709F0 780 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 NBPF5PQ86XG9 351 aaPredicted RBP6.84□□□□□ -1.31
CD44-236ENST00000533222 CREBRFQ8IUR6 639 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 MAP4K3Q8IVH8 894 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 GRIN3AQ8TCU5 1115 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 ANKRD24Q8TF21 1146 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 NBPF4Q96M43 638 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 COPRSQ9NQ92 184 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 SLC52A1Q9NWF4 448 aa6.84□□□□□ -1.31
CD44-236ENST00000533222 RNF225M0QZC1 329 aaPredicted RBP6.83□□□□□ -1.32
CD44-236ENST00000533222 ITGB2P05107 769 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 NEFHP12036 1026 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 BMP6P22004 513 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 RASSF7Q02833 373 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 POU4F3Q15319 338 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 C9orf131Q5VYM1 1079 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 KIAA1211Q6ZU35 1233 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 PDZD3Q86UT5 571 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 CEP44Q9C0F1 390 aa6.83□□□□□ -1.32
CD44-236ENST00000533222 ZFYVE1Q9HBF4 777 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms