RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NAA16Q6N069 864 aaPredicted RBP16.36■□□□□ 0.21
USP48-213ENST00000529637 TSPYL1Q9H0U9 437 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 CLIC4Q9Y696 253 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 EFCAB8A8MWE9 144 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 H3BQF6 201 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 TNNT3P45378 269 aaPredicted RBP16.36■□□□□ 0.21
USP48-213ENST00000529637 EXOSC10Q01780 885 aaKnown RBP16.36■□□□□ 0.21
USP48-213ENST00000529637 TCIRG1Q13488 830 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 LDHAL6AQ6ZMR3 332 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 BRINP3Q76B58 766 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 ASAP1Q9ULH1 1129 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 PRC1O43663 620 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 STK38Q15208 465 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 RASSF4Q9H2L5 321 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 VWA3AA6NCI4 1184 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 TMEM232C9JQI7 657 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 IDH1O75874 414 aaKnown RBP16.35■□□□□ 0.21
USP48-213ENST00000529637 C8orf76Q96K31 380 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 GJB4Q9NTQ9 266 aa16.35■□□□□ 0.21
USP48-213ENST00000529637 FGAP02671 866 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 LMAN1P49257 510 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 FUT8Q9BYC5 575 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 PARD6BQ9BYG5 372 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 ADAM21Q9UKJ8 722 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 KCNJ6P48051 423 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 PUS7LQ9H0K6 701 aaKnown RBP16.34■□□□□ 0.21
USP48-213ENST00000529637 ALS2Q96Q42 1657 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 ZNF213O14771 459 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 CIAO1O76071 339 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 TRDNQ13061 729 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 HSP90AA4PQ58FG1 418 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 ZSWIM4Q9H7M6 989 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 ATG3Q9NT62 314 aa16.34■□□□□ 0.21
USP48-213ENST00000529637 ADAMTS7Q9UKP4 1686 aa16.33■□□□□ 0.21
USP48-213ENST00000529637 ARFGEF2Q9Y6D5 1785 aa16.33■□□□□ 0.21
USP48-213ENST00000529637 ADALQ6DHV7 355 aa16.33■□□□□ 0.21
USP48-213ENST00000529637 CARMIL3Q8ND23 1372 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 GPAA1O43292 621 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 RXRAP19793 462 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 ZNF274Q96GC6 653 aaPredicted RBP16.32■□□□□ 0.2
USP48-213ENST00000529637 STARD3NLO95772 234 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 SLC3A2P08195 630 aaKnown RBP16.32■□□□□ 0.2
USP48-213ENST00000529637 FDPSP14324 419 aaKnown RBP16.32■□□□□ 0.2
USP48-213ENST00000529637 SYNE3Q6ZMZ3 975 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 GNG11P61952 73 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 SLC9C2Q5TAH2 1124 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 FOXR1Q6PIV2 292 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 LINC00301Q8NCQ3 95 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 HELBQ8NG08 1087 aaPredicted RBP16.32■□□□□ 0.2
USP48-213ENST00000529637 ISCA1Q9BUE6 129 aa16.32■□□□□ 0.2
USP48-213ENST00000529637 DHX16O60231 1041 aaKnown RBP16.31■□□□□ 0.2
USP48-213ENST00000529637 ZNF202O95125 648 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 ZFYP08048 801 aaPredicted RBP16.31■□□□□ 0.2
USP48-213ENST00000529637 NOP2P46087 812 aaKnown RBP16.31■□□□□ 0.2
USP48-213ENST00000529637 UBASH3AP57075 661 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 NCOA7Q8NI08 942 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 APPBP2Q92624 585 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 CHMP4CQ96CF2 233 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 BPIFA3Q9BQP9 254 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 MYH15Q9Y2K3 1946 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 NRDCO43847 1150 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 ITGA6P23229 1130 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 NLRP12P59046 1061 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 GPS2Q13227 327 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.31■□□□□ 0.26e-9■■□□□ 13.6
USP48-213ENST00000529637 ARFGAP3Q9NP61 516 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 TRMT112Q9UI30 125 aaKnown RBP16.31■□□□□ 0.2
USP48-213ENST00000529637 PPP2R2CQ9Y2T4 447 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 LMTK3Q96Q04 1460 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 ADAMTSL3P82987 1691 aa16.31■□□□□ 0.2
USP48-213ENST00000529637 MAP3K9P80192 1104 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 PPP2R3AQ06190 1150 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 CFAP100Q494V2 611 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 TMEM139Q8IV31 216 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 SRRTQ9BXP5 876 aaKnown RBP16.3■□□□□ 0.2
USP48-213ENST00000529637 IRX2Q9BZI1 471 aaPredicted RBP16.3■□□□□ 0.2
USP48-213ENST00000529637 GREM2Q9H772 168 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 CPDO75976 1380 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 SERPINC1P01008 464 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 HLFQ16534 295 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 SRLQ86TD4 932 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 CARD10Q9BWT7 1032 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 RTEL1Q9NZ71 1219 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 SALL1Q9NSC2 1324 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 ATP8B1O43520 1251 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 TOGARAM2Q6ZUX3 1019 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 RSRC2Q7L4I2 434 aaKnown RBP16.3■□□□□ 0.2
USP48-213ENST00000529637 STK11IPQ8N1F8 1099 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 GPR161Q8N6U8 529 aaKnown RBP16.3■□□□□ 0.2
USP48-213ENST00000529637 FBXO18Q8NFZ0 1043 aa16.3■□□□□ 0.2
USP48-213ENST00000529637 RRP15Q9Y3B9 282 aaKnown RBP16.3■□□□□ 0.2
USP48-213ENST00000529637 TUBB4AP04350 444 aa16.29■□□□□ 0.2
USP48-213ENST00000529637 PCCAP05165 728 aaPredicted RBP16.29■□□□□ 0.2
USP48-213ENST00000529637 DHX58Q96C10 678 aa16.29■□□□□ 0.2
USP48-213ENST00000529637 TOMM22Q9NS69 142 aa16.29■□□□□ 0.2
USP48-213ENST00000529637 ANKRD18BA2A2Z9 1011 aa16.29■□□□□ 0.2
USP48-213ENST00000529637 N4BP1O75113 896 aaKnown RBP16.29■□□□□ 0.2
USP48-213ENST00000529637 LONRF2Q1L5Z9 754 aa16.29■□□□□ 0.2
USP48-213ENST00000529637 NFXL1Q6ZNB6 911 aa16.29■□□□□ 0.2
USP48-213ENST00000529637 ZBTB38Q8NAP3 1195 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms